Analysis of interatomic Contacts of Structural Units in PDB entry:
3HO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HO6 entry

There are 2 chains in PDB entry 3HO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5SER 259
B
 VAL 6SER 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3HO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 22Right-handed alpha
Helix 2
2
A
22 28Right-handed alpha
Helix 3
3
A
47 61Right-handed alpha
Helix 4
4
A
71 75Right-handed 310
Helix 5
5
A
97 101Right-handed 310
Helix 6
6
A
127 143Right-handed alpha
Helix 7
7
A
166 169Right-handed 310
Helix 8
8
A
170 187Right-handed alpha
Helix 9
9
A
191 193Right-handed 310
Helix 10
10
A
223 230Right-handed alpha
Helix 11
11
B
15 22Right-handed alpha
Helix 12
12
B
22 28Right-handed alpha
Helix 13
13
B
47 61Right-handed alpha
Helix 14
14
B
71 75Right-handed 310
Helix 15
15
B
97 101Right-handed 310
Helix 16
16
B
128 143Right-handed alpha
Helix 17
17
B
166 169Right-handed 310
Helix 18
18
B
170 187Right-handed alpha
Helix 19
19
B
191 193Right-handed 310
Helix 20
20
B
223 230Right-handed alpha
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There are 5 sheets in PDB entry 3HO6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
65 69anti-parallel
Strand 4
A
37 43parallel
Strand 5
A
105 111parallel
Strand 6
A
150 156parallel
Strand 7
A
195 199parallel
Strand 8
A
236 241anti-parallel
Strand 9
A
246 251anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
221 222anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 92first strand
Strand 2
B
77 81anti-parallel
Strand 3
B
65 69anti-parallel
Strand 4
B
37 43parallel
Strand 5
B
105 111parallel
Strand 6
B
150 159parallel
Strand 7
B
195 200parallel
Strand 8
B
236 241anti-parallel
Strand 9
B
246 251anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
126 127anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 206first strand
Strand 2
B
212 215anti-parallel
Strand 3
B
221 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il