Analysis of interatomic Contacts of Structural Units in PDB entry:
3HO8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HO8 entry

There are 2 chains in PDB entry 3HO8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 36	ASN 1093
D	GLN 36	ILE 374

There are181 helices in PDB entry 3HO8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	45	59	Right-handed alpha
Helix 2	2	A	68	74	Right-handed 310
Helix 3	3	A	75	80	Right-handed 310
Helix 4	4	A	93	97	Right-handed 310
Helix 5	5	A	98	109	Right-handed alpha
Helix 6	6	A	124	134	Right-handed alpha
Helix 7	7	A	142	149	Right-handed alpha
Helix 8	8	A	151	161	Right-handed alpha
Helix 9	9	A	286	301	Right-handed alpha
Helix 10	10	A	332	341	Right-handed alpha
Helix 11	11	A	343	353	Right-handed alpha
Helix 12	12	A	435	450	Right-handed alpha
Helix 13	13	A	458	467	Right-handed alpha
Helix 14	14	A	468	473	Right-handed alpha
Helix 15	15	A	485	489	Right-handed 310
Helix 16	16	A	497	511	Right-handed alpha
Helix 17	17	A	533	538	Right-handed alpha
Helix 18	18	A	540	546	Right-handed alpha
Helix 19	19	A	550	558	Right-handed alpha
Helix 20	20	A	571	578	Right-handed alpha
Helix 21	21	A	583	590	Right-handed alpha
Helix 22	22	A	590	598	Right-handed alpha
Helix 23	23	A	599	601	Right-handed 310
Helix 24	24	A	610	618	Right-handed alpha
Helix 25	25	A	622	634	Right-handed alpha
Helix 26	26	A	655	669	Right-handed alpha
Helix 27	27	A	685	697	Right-handed alpha
Helix 28	28	A	719	733	Right-handed alpha
Helix 29	29	A	748	760	Right-handed alpha
Helix 30	30	A	778	789	Right-handed alpha
Helix 31	31	A	798	802	Right-handed 310
Helix 32	32	A	809	817	Right-handed alpha
Helix 33	33	A	827	842	Right-handed alpha
Helix 34	34	A	843	849	Right-handed 310
Helix 35	35	A	860	865	Right-handed alpha
Helix 36	36	A	878	882	Right-handed 310
Helix 37	37	A	887	899	Right-handed alpha
Helix 38	38	A	910	918	Right-handed alpha
Helix 39	39	A	929	934	Right-handed alpha
Helix 40	40	A	941	950	Right-handed alpha
Helix 41	41	A	960	969	Right-handed alpha
Helix 42	42	A	977	982	Right-handed alpha
Helix 43	43	A	986	994	Right-handed alpha
Helix 44	44	A	1003	1013	Right-handed alpha
Helix 45	45	A	1013	1027	Right-handed alpha
Helix 46	46	A	1029	1033	Right-handed 310
Helix 47	47	A	1034	1041	Right-handed alpha
Helix 48	48	D	45	60	Right-handed alpha
Helix 49	49	D	75	80	Right-handed 310
Helix 50	50	D	93	97	Right-handed 310
Helix 51	51	D	98	109	Right-handed alpha
Helix 52	52	D	124	134	Right-handed alpha
Helix 53	53	D	142	149	Right-handed alpha
Helix 54	54	D	151	163	Right-handed alpha
Helix 55	55	D	288	302	Right-handed alpha
Helix 56	56	D	332	341	Right-handed alpha
Helix 57	57	D	343	353	Right-handed alpha
Helix 58	58	D	363	367	Right-handed 310
Helix 59	59	D	435	450	Right-handed alpha
Helix 60	60	D	458	468	Right-handed alpha
Helix 61	61	D	468	473	Right-handed alpha
Helix 62	62	D	495	511	Right-handed alpha
Helix 63	63	D	542	560	Right-handed alpha
Helix 64	64	D	571	578	Right-handed alpha
Helix 65	65	D	583	598	Right-handed alpha
Helix 66	66	D	610	619	Right-handed alpha
Helix 67	67	D	622	634	Right-handed alpha
Helix 68	68	D	655	670	Right-handed alpha
Helix 69	69	D	682	695	Right-handed alpha
Helix 70	70	D	712	716	Right-handed 310
Helix 71	71	D	721	732	Right-handed alpha
Helix 72	72	D	748	757	Right-handed alpha
Helix 73	73	D	778	789	Right-handed alpha
Helix 74	74	D	798	802	Right-handed 310
Helix 75	75	D	809	817	Right-handed alpha
Helix 76	76	D	829	842	Right-handed alpha
Helix 77	77	D	843	849	Right-handed 310
Helix 78	78	D	858	862	Right-handed 310
Helix 79	79	D	963	968	Right-handed alpha
Helix 80	80	D	977	981	Right-handed 310
Helix 81	81	D	986	992	Right-handed alpha
Helix 82	82	D	1004	1013	Right-handed alpha
Helix 83	83	D	1013	1027	Right-handed alpha
Helix 84	84	D	1029	1033	Right-handed 310
Helix 85	85	D	1034	1040	Right-handed alpha
Helix 86	86	C	45	58	Right-handed alpha
Helix 87	87	C	74	80	Right-handed 310
Helix 88	88	C	93	97	Right-handed 310
Helix 89	89	C	98	109	Right-handed alpha
Helix 90	90	C	124	133	Right-handed alpha
Helix 91	91	C	142	149	Right-handed alpha
Helix 92	92	C	151	163	Right-handed alpha
Helix 93	93	C	286	302	Right-handed alpha
Helix 94	94	C	332	341	Right-handed alpha
Helix 95	95	C	343	353	Right-handed alpha
Helix 96	96	C	363	367	Right-handed 310
Helix 97	97	C	435	450	Right-handed alpha
Helix 98	98	C	458	468	Right-handed alpha
Helix 99	99	C	468	473	Right-handed alpha
Helix 100	100	C	479	484	Right-handed alpha
Helix 101	101	C	485	488	Right-handed 310
Helix 102	102	C	495	511	Right-handed alpha
Helix 103	103	C	533	538	Right-handed alpha
Helix 104	104	C	540	548	Right-handed alpha
Helix 105	105	C	549	560	Right-handed alpha
Helix 106	106	C	571	578	Right-handed alpha
Helix 107	107	C	583	598	Right-handed alpha
Helix 108	108	C	610	618	Right-handed alpha
Helix 109	109	C	622	634	Right-handed alpha
Helix 110	110	C	655	669	Right-handed alpha
Helix 111	111	C	686	696	Right-handed alpha
Helix 112	112	C	719	733	Right-handed alpha
Helix 113	113	C	748	763	Right-handed alpha
Helix 114	114	C	778	789	Right-handed alpha
Helix 115	115	C	798	802	Right-handed 310
Helix 116	116	C	809	817	Right-handed alpha
Helix 117	117	C	827	842	Right-handed alpha
Helix 118	118	C	843	849	Right-handed 310
Helix 119	119	C	860	865	Right-handed alpha
Helix 120	120	C	872	877	Right-handed alpha
Helix 121	121	C	883	885	Right-handed 310
Helix 122	122	C	886	901	Right-handed alpha
Helix 123	123	C	909	924	Right-handed alpha
Helix 124	124	C	941	949	Right-handed alpha
Helix 125	125	C	960	969	Right-handed alpha
Helix 126	126	C	977	982	Right-handed alpha
Helix 127	127	C	986	998	Right-handed alpha
Helix 128	128	C	1003	1013	Right-handed alpha
Helix 129	129	C	1013	1028	Right-handed alpha
Helix 130	130	C	1029	1033	Right-handed 310
Helix 131	131	C	1034	1041	Right-handed alpha
Helix 132	132	B	46	59	Right-handed alpha
Helix 133	133	B	68	74	Right-handed 310
Helix 134	134	B	75	79	Right-handed 310
Helix 135	135	B	93	97	Right-handed 310
Helix 136	136	B	98	109	Right-handed alpha
Helix 137	137	B	124	133	Right-handed alpha
Helix 138	138	B	142	150	Right-handed alpha
Helix 139	139	B	151	162	Right-handed alpha
Helix 140	140	B	284	300	Right-handed alpha
Helix 141	141	B	332	341	Right-handed alpha
Helix 142	142	B	343	353	Right-handed alpha
Helix 143	143	B	363	367	Right-handed 310
Helix 144	144	B	435	450	Right-handed alpha
Helix 145	145	B	458	468	Right-handed alpha
Helix 146	146	B	468	473	Right-handed alpha
Helix 147	147	B	479	484	Right-handed alpha
Helix 148	148	B	485	489	Right-handed 310
Helix 149	149	B	495	511	Right-handed alpha
Helix 150	150	B	533	538	Right-handed alpha
Helix 151	151	B	540	560	Right-handed alpha
Helix 152	152	B	571	578	Right-handed alpha
Helix 153	153	B	583	590	Right-handed alpha
Helix 154	154	B	590	598	Right-handed alpha
Helix 155	155	B	610	618	Right-handed alpha
Helix 156	156	B	622	634	Right-handed alpha
Helix 157	157	B	655	669	Right-handed alpha
Helix 158	158	B	682	685	Right-handed 310
Helix 159	159	B	686	696	Right-handed alpha
Helix 160	160	B	719	734	Right-handed alpha
Helix 161	161	B	748	761	Right-handed alpha
Helix 162	162	B	773	777	Right-handed 310
Helix 163	163	B	778	789	Right-handed alpha
Helix 164	164	B	798	802	Right-handed 310
Helix 165	165	B	809	817	Right-handed alpha
Helix 166	166	B	827	843	Right-handed alpha
Helix 167	167	B	844	849	Right-handed 310
Helix 168	168	B	859	863	Right-handed 310
Helix 169	169	B	870	881	Right-handed alpha
Helix 170	170	B	886	901	Right-handed alpha
Helix 171	171	B	909	924	Right-handed alpha
Helix 172	172	B	929	934	Right-handed alpha
Helix 173	173	B	934	939	Right-handed alpha
Helix 174	174	B	941	949	Right-handed alpha
Helix 175	175	B	960	969	Right-handed alpha
Helix 176	176	B	977	982	Right-handed 310
Helix 177	177	B	986	998	Right-handed alpha
Helix 178	178	B	1003	1013	Right-handed alpha
Helix 179	179	B	1013	1028	Right-handed alpha
Helix 180	180	B	1029	1033	Right-handed 310
Helix 181	181	B	1034	1041	Right-handed alpha

There are 25 sheets in PDB entry 3HO8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	62	67	parallel
Strand 3	A	39	42	parallel
Strand 4	A	113	115	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	325	first strand
Strand 2	A	309	314	anti-parallel
Strand 3	A	243	251	anti-parallel
Strand 4	A	257	268	anti-parallel
Strand 5	A	273	278	anti-parallel
Strand 6	A	372	379	anti-parallel
Strand 7	A	425	433	anti-parallel
Strand 8	A	405	409	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	388	389	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	393	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	451	452	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	567	first strand
Strand 2	A	603	608	parallel
Strand 3	A	639	644	parallel
Strand 4	A	675	677	parallel
Strand 5	A	701	705	parallel
Strand 6	A	737	742	parallel
Strand 7	A	768	772	parallel
Strand 8	A	793	796	parallel
Strand 9	A	566	567	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1046	1051	first strand
Strand 2	A	1057	1065	anti-parallel
Strand 3	A	1073	1080	anti-parallel
Strand 4	A	1086	1090	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	85	first strand
Strand 2	D	62	67	parallel
Strand 3	D	39	42	parallel
Strand 4	D	113	115	parallel
Strand 5	D	137	138	parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	326	first strand
Strand 2	D	306	315	anti-parallel
Strand 3	D	243	251	anti-parallel
Strand 4	D	257	267	anti-parallel
Strand 5	D	275	278	anti-parallel
Strand 6	D	372	379	anti-parallel
Strand 7	D	425	433	anti-parallel
Strand 8	D	405	408	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	398	first strand
Strand 2	D	451	453	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	567	first strand
Strand 2	D	603	605	parallel
Strand 3	D	638	643	parallel
Strand 4	D	673	677	parallel
Strand 5	D	699	703	parallel
Strand 6	D	737	742	parallel
Strand 7	D	768	772	parallel
Strand 8	D	793	796	parallel
Strand 9	D	564	567	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1047	1051	first strand
Strand 2	D	1057	1068	anti-parallel
Strand 3	D	1073	1080	anti-parallel
Strand 4	D	1083	1090	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	62	67	parallel
Strand 3	C	39	42	parallel
Strand 4	C	113	115	parallel
Strand 5	C	137	138	parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	326	first strand
Strand 2	C	306	315	anti-parallel
Strand 3	C	243	251	anti-parallel
Strand 4	C	257	269	anti-parallel
Strand 5	C	272	278	anti-parallel
Strand 6	C	372	378	anti-parallel
Strand 7	C	427	433	anti-parallel
Strand 8	C	405	409	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	388	389	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	393	first strand
Strand 2	C	417	418	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	398	first strand
Strand 2	C	451	453	anti-parallel

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There are 9 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	567	first strand
Strand 2	C	603	608	parallel
Strand 3	C	638	644	parallel
Strand 4	C	673	677	parallel
Strand 5	C	699	705	parallel
Strand 6	C	737	741	parallel
Strand 7	C	768	771	parallel
Strand 8	C	793	796	parallel
Strand 9	C	564	567	parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1046	1053	first strand
Strand 2	C	1056	1065	anti-parallel
Strand 3	C	1073	1080	anti-parallel
Strand 4	C	1083	1090	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	62	67	parallel
Strand 3	B	39	42	parallel
Strand 4	B	113	115	parallel

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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	326	first strand
Strand 2	B	306	315	anti-parallel
Strand 3	B	243	251	anti-parallel
Strand 4	B	257	268	anti-parallel
Strand 5	B	273	278	anti-parallel
Strand 6	B	372	378	anti-parallel
Strand 7	B	427	433	anti-parallel
Strand 8	B	405	409	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	393	first strand
Strand 2	B	417	418	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	398	first strand
Strand 2	B	451	453	anti-parallel

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There are 9 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	603	608	parallel
Strand 3	B	638	644	parallel
Strand 4	B	673	677	parallel
Strand 5	B	699	705	parallel
Strand 6	B	737	741	parallel
Strand 7	B	768	771	parallel
Strand 8	B	793	796	parallel
Strand 9	B	564	567	parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1046	1053	first strand
Strand 2	B	1056	1065	anti-parallel
Strand 3	B	1073	1080	anti-parallel
Strand 4	B	1083	1090	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HO8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HO8