Analysis of interatomic Contacts of Structural Units in PDB entry:
3HPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HPA entry

There are 2 chains in PDB entry 3HPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 29ARG 479
B
 LYS 29ARG 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3HPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 70Right-handed 310
Helix 2
2
A
95 101Right-handed 310
Helix 3
3
A
111 124Right-handed alpha
Helix 4
4
A
127 144Right-handed alpha
Helix 5
5
A
162 174Right-handed alpha
Helix 6
6
A
202 217Right-handed alpha
Helix 7
7
A
238 253Right-handed alpha
Helix 8
8
A
263 269Right-handed alpha
Helix 9
9
A
277 285Right-handed alpha
Helix 10
10
A
301 312Right-handed alpha
Helix 11
11
A
318 325Right-handed alpha
Helix 12
12
A
331 339Right-handed alpha
Helix 13
13
A
356 373Right-handed alpha
Helix 14
14
A
378 386Right-handed alpha
Helix 15
15
A
387 395Right-handed alpha
Helix 16
16
A
417 421Right-handed 310
Helix 17
17
A
426 434Right-handed alpha
Helix 18
18
A
459 479Right-handed alpha
Helix 19
19
B
68 70Right-handed 310
Helix 20
20
B
95 101Right-handed 310
Helix 21
21
B
104 109Right-handed alpha
Helix 22
22
B
111 124Right-handed alpha
Helix 23
23
B
127 144Right-handed alpha
Helix 24
24
B
162 174Right-handed alpha
Helix 25
25
B
202 217Right-handed alpha
Helix 26
26
B
238 253Right-handed alpha
Helix 27
27
B
263 268Right-handed alpha
Helix 28
28
B
277 284Right-handed alpha
Helix 29
29
B
301 312Right-handed alpha
Helix 30
30
B
318 325Right-handed alpha
Helix 31
31
B
331 339Right-handed alpha
Helix 32
32
B
356 373Right-handed alpha
Helix 33
33
B
378 387Right-handed alpha
Helix 34
34
B
387 395Right-handed alpha
Helix 35
35
B
417 421Right-handed 310
Helix 36
36
B
426 434Right-handed alpha
Helix 37
37
B
459 479Right-handed alpha
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There are 6 sheets in PDB entry 3HPA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 66first strand
Strand 2
A
48 57anti-parallel
Strand 3
A
30 40anti-parallel
Strand 4
A
76 79parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 66first strand
Strand 2
A
48 57anti-parallel
Strand 3
A
30 40anti-parallel
Strand 4
A
83 87parallel
Strand 5
A
410 414anti-parallel
Strand 6
A
441 444anti-parallel
Strand 7
A
447 451anti-parallel
Strand 8
A
454 455anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
147 151parallel
Strand 3
A
176 183parallel
Strand 4
A
225 231parallel
Strand 5
A
255 260parallel
Strand 6
A
292 296parallel
Strand 7
A
314 317parallel
Strand 8
A
342 344parallel
Strand 9
A
89 91parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 66first strand
Strand 2
B
48 57anti-parallel
Strand 3
B
30 40anti-parallel
Strand 4
B
76 79parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 66first strand
Strand 2
B
48 57anti-parallel
Strand 3
B
30 40anti-parallel
Strand 4
B
83 87parallel
Strand 5
B
410 414anti-parallel
Strand 6
B
441 444anti-parallel
Strand 7
B
447 451anti-parallel
Strand 8
B
454 455anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
147 151parallel
Strand 3
B
176 183parallel
Strand 4
B
225 231parallel
Strand 5
B
255 260parallel
Strand 6
B
292 296parallel
Strand 7
B
314 317parallel
Strand 8
B
342 344parallel
Strand 9
B
89 91parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il