Analysis of interatomic Contacts of Structural Units in PDB entry:
3HPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HPD entry

There is 1 chain in PDB entry 3HPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3HPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 15Right-handed alpha
Helix 2
2
A
26 38Right-handed alpha
Helix 3
3
A
49 57Right-handed alpha
Helix 4
4
A
68 86Right-handed alpha
Helix 5
5
A
99 113Right-handed alpha
Helix 6
6
A
121 132Right-handed alpha
Helix 7
7
A
143 158Right-handed alpha
Helix 8
8
A
184 190Right-handed 310
Helix 9
9
A
192 206Right-handed alpha
Helix 10
10
A
209 232Right-handed alpha
Helix 11
11
A
234 249Right-handed alpha
Helix 12
12
A
250 258Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3HPD.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
17 21parallel
Strand 3
A
59 63parallel
Strand 4
A
89 92parallel
Strand 5
A
116 120parallel
Strand 6
A
161 165parallel
Strand 7
A
169 172anti-parallel
Strand 8
A
177 180anti-parallel
Strand 9
A
260 263anti-parallel
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