Analysis of interatomic Contacts of Structural Units in PDB entry:
3HPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HPH entry

There are 8 chains in PDB entry 3HPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4GLN 213
B
 MET 1LYS 215
C
 MET 1SER 216
D
 GLU 3SER 214
E
 MET 348PHE 440
F
 LEU 352MET 426
G
 GLN 353TYR 420
H
 MET 348PHE 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 69 helices in PDB entry 3HPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 16Right-handed alpha
Helix 2
2
A
18 26Right-handed alpha
Helix 3
3
A
29 38Right-handed alpha
Helix 4
4
A
95 111Right-handed alpha
Helix 5
5
A
120 125Right-handed alpha
Helix 6
6
A
125 136Right-handed alpha
Helix 7
7
A
146 168Right-handed alpha
Helix 8
8
A
169 171Right-handed 310
Helix 9
9
A
173 187Right-handed alpha
Helix 10
10
A
196 213Right-handed alpha
Helix 11
11
B
4 16Right-handed alpha
Helix 12
12
B
18 27Right-handed alpha
Helix 13
13
B
29 39Right-handed alpha
Helix 14
14
B
95 111Right-handed alpha
Helix 15
15
B
120 125Right-handed alpha
Helix 16
16
B
125 136Right-handed alpha
Helix 17
17
B
151 168Right-handed alpha
Helix 18
18
B
169 171Right-handed 310
Helix 19
19
B
173 187Right-handed alpha
Helix 20
20
B
196 213Right-handed alpha
Helix 21
21
C
4 16Right-handed alpha
Helix 22
22
C
18 27Right-handed alpha
Helix 23
23
C
29 39Right-handed alpha
Helix 24
24
C
95 111Right-handed alpha
Helix 25
25
C
120 125Right-handed alpha
Helix 26
26
C
125 136Right-handed alpha
Helix 27
27
C
151 168Right-handed alpha
Helix 28
28
C
169 171Right-handed 310
Helix 29
29
C
173 187Right-handed alpha
Helix 30
30
C
196 213Right-handed alpha
Helix 31
31
D
4 16Right-handed alpha
Helix 32
32
D
18 26Right-handed alpha
Helix 33
33
D
29 38Right-handed alpha
Helix 34
34
D
95 111Right-handed alpha
Helix 35
35
D
120 125Right-handed alpha
Helix 36
36
D
125 135Right-handed alpha
Helix 37
37
D
146 168Right-handed alpha
Helix 38
38
D
169 171Right-handed 310
Helix 39
39
D
173 187Right-handed alpha
Helix 40
40
D
196 214Right-handed alpha
Helix 41
41
E
348 363Right-handed alpha
Helix 42
42
E
364 368Right-handed 310
Helix 43
43
E
369 383Right-handed alpha
Helix 44
44
E
386 391Right-handed alpha
Helix 45
45
E
393 403Right-handed alpha
Helix 46
46
E
404 406Right-handed 310
Helix 47
47
E
409 428Right-handed alpha
Helix 48
48
E
434 440Right-handed alpha
Helix 49
49
F
352 363Right-handed alpha
Helix 50
50
F
364 368Right-handed 310
Helix 51
51
F
369 378Right-handed alpha
Helix 52
52
F
396 403Right-handed alpha
Helix 53
53
F
404 406Right-handed 310
Helix 54
54
F
409 424Right-handed alpha
Helix 55
55
G
353 363Right-handed alpha
Helix 56
56
G
364 368Right-handed 310
Helix 57
57
G
369 378Right-handed alpha
Helix 58
58
G
379 381Right-handed 310
Helix 59
59
G
396 403Right-handed alpha
Helix 60
60
G
404 406Right-handed 310
Helix 61
61
G
409 420Right-handed alpha
Helix 62
62
H
348 363Right-handed alpha
Helix 63
63
H
364 368Right-handed 310
Helix 64
64
H
369 383Right-handed alpha
Helix 65
65
H
386 391Right-handed alpha
Helix 66
66
H
393 403Right-handed alpha
Helix 67
67
H
404 406Right-handed 310
Helix 68
68
H
409 428Right-handed alpha
Helix 69
69
H
434 440Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3HPH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
73 80anti-parallel
Strand 3
A
62 70anti-parallel
Strand 4
A
114 117parallel
Strand 5
A
138 141parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 91first strand
Strand 2
B
73 80anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
114 118parallel
Strand 5
B
138 142parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 91first strand
Strand 2
C
73 80anti-parallel
Strand 3
C
62 70anti-parallel
Strand 4
C
114 118parallel
Strand 5
C
138 142parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 91first strand
Strand 2
D
73 80anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
114 117parallel
Strand 5
D
138 141parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il