Analysis of interatomic Contacts of Structural Units in PDB entry:
3HPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HPY entry

There are 4 chains in PDB entry 3HPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PHE 289
B
 ALA 2PHE 289
C
 ALA 2GLN 297
D
 ALA 2GLN 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3HPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
75 90Right-handed alpha
Helix 3
3
A
140 145Right-handed 310
Helix 4
4
A
161 172Right-handed alpha
Helix 5
5
A
223 237Right-handed alpha
Helix 6
6
B
18 29Right-handed alpha
Helix 7
7
B
75 90Right-handed alpha
Helix 8
8
B
140 145Right-handed 310
Helix 9
9
B
161 172Right-handed alpha
Helix 10
10
B
223 237Right-handed alpha
Helix 11
11
B
285 289Right-handed 310
Helix 12
12
C
18 29Right-handed alpha
Helix 13
13
C
75 90Right-handed alpha
Helix 14
14
C
140 145Right-handed 310
Helix 15
15
C
161 172Right-handed alpha
Helix 16
16
C
223 237Right-handed alpha
Helix 17
17
C
249 252Right-handed 310
Helix 18
18
C
288 294Right-handed alpha
Helix 19
19
D
18 29Right-handed alpha
Helix 20
20
D
75 90Right-handed alpha
Helix 21
21
D
140 145Right-handed 310
Helix 22
22
D
161 172Right-handed alpha
Helix 23
23
D
223 237Right-handed alpha
Helix 24
24
D
249 252Right-handed 310
Helix 25
25
D
285 287Right-handed 310
Helix 26
26
D
288 294Right-handed alpha
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There are 8 sheets in PDB entry 3HPY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
56 60anti-parallel
Strand 4
A
6 16parallel
Strand 5
A
65 73anti-parallel
Strand 6
A
117 121parallel
Strand 7
A
107 111anti-parallel
Strand 8
A
94 96anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
253 259anti-parallel
Strand 3
A
265 271anti-parallel
Strand 4
A
213 220parallel
Strand 5
A
151 159anti-parallel
Strand 6
A
203 207parallel
Strand 7
A
189 195anti-parallel
Strand 8
A
176 182anti-parallel
Strand 9
A
282 284parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
43 46anti-parallel
Strand 3
B
56 60anti-parallel
Strand 4
B
6 16parallel
Strand 5
B
65 73anti-parallel
Strand 6
B
117 121parallel
Strand 7
B
107 111anti-parallel
Strand 8
B
94 96anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 247first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
265 270anti-parallel
Strand 4
B
213 220parallel
Strand 5
B
151 159anti-parallel
Strand 6
B
203 207parallel
Strand 7
B
189 195anti-parallel
Strand 8
B
176 182anti-parallel
Strand 9
B
282 284parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 37first strand
Strand 2
C
43 46anti-parallel
Strand 3
C
56 60anti-parallel
Strand 4
C
6 16parallel
Strand 5
C
65 73anti-parallel
Strand 6
C
117 121parallel
Strand 7
C
107 111anti-parallel
Strand 8
C
93 96anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 247first strand
Strand 2
C
254 259anti-parallel
Strand 3
C
265 270anti-parallel
Strand 4
C
213 220parallel
Strand 5
C
151 159anti-parallel
Strand 6
C
203 207parallel
Strand 7
C
189 195anti-parallel
Strand 8
C
176 182anti-parallel
Strand 9
C
282 284parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 37first strand
Strand 2
D
42 46anti-parallel
Strand 3
D
56 60anti-parallel
Strand 4
D
6 16parallel
Strand 5
D
65 73anti-parallel
Strand 6
D
117 121parallel
Strand 7
D
107 111anti-parallel
Strand 8
D
94 96anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 247first strand
Strand 2
D
254 259anti-parallel
Strand 3
D
265 269anti-parallel
Strand 4
D
213 220parallel
Strand 5
D
151 159anti-parallel
Strand 6
D
203 207parallel
Strand 7
D
189 195anti-parallel
Strand 8
D
176 182anti-parallel
Strand 9
D
282 284parallel
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