Analysis of interatomic Contacts of Structural Units in PDB entry:
3HPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HPZ entry

There are 2 chains in PDB entry 3HPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 18ALA 643
B
 THR 18ALA 643
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 3HPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 46Right-handed 310
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
62 66Right-handed 310
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
91 106Right-handed alpha
Helix 6
6
A
118 131Right-handed alpha
Helix 7
7
A
147 159Right-handed alpha
Helix 8
8
A
173 180Right-handed alpha
Helix 9
9
A
184 205Right-handed alpha
Helix 10
10
A
219 223Right-handed 310
Helix 11
11
A
224 240Right-handed alpha
Helix 12
12
A
259 274Right-handed alpha
Helix 13
13
A
276 278Right-handed 310
Helix 14
14
A
292 303Right-handed alpha
Helix 15
15
A
311 315Right-handed 310
Helix 16
16
A
323 333Right-handed alpha
Helix 17
17
A
344 357Right-handed alpha
Helix 18
18
A
376 396Right-handed alpha
Helix 19
19
A
400 404Right-handed 310
Helix 20
20
A
414 419Right-handed 310
Helix 21
21
A
436 446Right-handed alpha
Helix 22
22
A
450 462Right-handed alpha
Helix 23
23
A
476 489Right-handed alpha
Helix 24
24
A
533 544Right-handed alpha
Helix 25
25
A
626 642Right-handed alpha
Helix 26
26
B
42 46Right-handed 310
Helix 27
27
B
48 53Right-handed alpha
Helix 28
28
B
62 66Right-handed 310
Helix 29
29
B
82 86Right-handed 310
Helix 30
30
B
91 106Right-handed alpha
Helix 31
31
B
118 131Right-handed alpha
Helix 32
32
B
147 158Right-handed alpha
Helix 33
33
B
173 180Right-handed alpha
Helix 34
34
B
184 205Right-handed alpha
Helix 35
35
B
219 223Right-handed 310
Helix 36
36
B
224 240Right-handed alpha
Helix 37
37
B
259 274Right-handed alpha
Helix 38
38
B
276 278Right-handed 310
Helix 39
39
B
292 303Right-handed alpha
Helix 40
40
B
311 315Right-handed 310
Helix 41
41
B
323 333Right-handed alpha
Helix 42
42
B
344 357Right-handed alpha
Helix 43
43
B
376 397Right-handed alpha
Helix 44
44
B
400 404Right-handed 310
Helix 45
45
B
414 419Right-handed 310
Helix 46
46
B
436 446Right-handed alpha
Helix 47
47
B
450 463Right-handed alpha
Helix 48
48
B
476 489Right-handed alpha
Helix 49
49
B
533 543Right-handed alpha
Helix 50
50
B
626 642Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 3HPZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
109 113parallel
Strand 3
A
139 145parallel
Strand 4
A
163 171parallel
Strand 5
A
210 218parallel
Strand 6
A
247 253parallel
Strand 7
A
280 286parallel
Strand 8
A
307 310parallel
Strand 9
A
73 76parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
423 424parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 503first strand
Strand 2
A
512 520anti-parallel
Strand 3
A
523 531anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 624first strand
Strand 2
A
567 576anti-parallel
Strand 3
A
548 558anti-parallel
Strand 4
B
547 559anti-parallel
Strand 5
B
566 577anti-parallel
Strand 6
B
615 624anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
109 113parallel
Strand 3
B
139 144parallel
Strand 4
B
163 171parallel
Strand 5
B
210 218parallel
Strand 6
B
247 253parallel
Strand 7
B
280 286parallel
Strand 8
B
307 310parallel
Strand 9
B
73 76parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
423 424parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 504first strand
Strand 2
B
512 520anti-parallel
Strand 3
B
523 531anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il