Analysis of interatomic Contacts of Structural Units in PDB entry:
3HQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HQD entry

There are 2 chains in PDB entry 3HQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 17ASN 366
B
 LYS 17ASN 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 3HQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 35Right-handed alpha
Helix 2
2
A
77 95Right-handed alpha
Helix 3
3
A
110 116Right-handed alpha
Helix 4
4
A
120 124Right-handed 310
Helix 5
5
A
134 151Right-handed alpha
Helix 6
6
A
206 221Right-handed alpha
Helix 7
7
A
271 276Right-handed alpha
Helix 8
8
A
278 304Right-handed alpha
Helix 9
9
A
310 313Right-handed 310
Helix 10
10
A
314 320Right-handed alpha
Helix 11
11
A
339 341Right-handed 310
Helix 12
12
A
342 358Right-handed alpha
Helix 13
13
B
29 35Right-handed alpha
Helix 14
14
B
77 95Right-handed alpha
Helix 15
15
B
110 116Right-handed alpha
Helix 16
16
B
126 130Right-handed 310
Helix 17
17
B
134 151Right-handed alpha
Helix 18
18
B
206 221Right-handed alpha
Helix 19
19
B
271 276Right-handed alpha
Helix 20
20
B
279 304Right-handed alpha
Helix 21
21
B
310 313Right-handed 310
Helix 22
22
B
314 321Right-handed alpha
Helix 23
23
B
322 324Right-handed 310
Helix 24
24
B
339 341Right-handed 310
Helix 25
25
B
342 357Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3HQD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
20 25parallel
Strand 3
A
328 336parallel
Strand 4
A
98 104parallel
Strand 5
A
254 265parallel
Strand 6
A
236 248anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
167 170anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
20 25parallel
Strand 3
A
328 336parallel
Strand 4
A
98 104parallel
Strand 5
A
254 265parallel
Strand 6
A
236 248anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
63 67anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
190 197anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
232 233anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
20 25parallel
Strand 3
B
329 336parallel
Strand 4
B
98 104parallel
Strand 5
B
254 265parallel
Strand 6
B
236 248anti-parallel
Strand 7
B
153 163anti-parallel
Strand 8
B
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
20 25parallel
Strand 3
B
329 336parallel
Strand 4
B
98 104parallel
Strand 5
B
254 265parallel
Strand 6
B
236 248anti-parallel
Strand 7
B
153 163anti-parallel
Strand 8
B
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
49 53anti-parallel
Strand 3
B
63 67anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 186first strand
Strand 2
B
194 197anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
232 233anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il