Analysis of interatomic Contacts of Structural Units in PDB entry:
3HRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HRV entry

There are 2 chains in PDB entry 3HRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26SER 199
B
 SER 30SER 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3HRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 29Right-handed 310
Helix 2
2
A
30 52Right-handed alpha
Helix 3
3
A
62 76Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
116 128Right-handed alpha
Helix 6
6
A
129 131Right-handed 310
Helix 7
7
A
143 148Right-handed 310
Helix 8
8
A
156 160Right-handed 310
Helix 9
9
A
178 185Right-handed alpha
Helix 10
10
B
30 52Right-handed alpha
Helix 11
11
B
62 76Right-handed alpha
Helix 12
12
B
81 85Right-handed 310
Helix 13
13
B
116 128Right-handed alpha
Helix 14
14
B
129 131Right-handed 310
Helix 15
15
B
143 148Right-handed 310
Helix 16
16
B
156 160Right-handed 310
Helix 17
17
B
178 185Right-handed alpha
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There are 2 sheets in PDB entry 3HRV. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 100first strand
Strand 2
A
103 115anti-parallel
Strand 3
A
192 198anti-parallel
Strand 4
A
133 138anti-parallel
Strand 5
A
162 165anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 100first strand
Strand 2
B
103 115anti-parallel
Strand 3
B
192 198anti-parallel
Strand 4
B
133 138anti-parallel
Strand 5
B
162 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il