Analysis of interatomic Contacts of Structural Units in PDB entry:
3HSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HSD entry

There are 2 chains in PDB entry 3HSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1TRP 158
B
 THR 1TRP 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3HSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
65 81Right-handed alpha
Helix 3
3
A
84 89Right-handed 310
Helix 4
4
A
117 120Right-handed 310
Helix 5
5
A
121 132Right-handed alpha
Helix 6
6
A
142 150Right-handed alpha
Helix 7
7
B
14 27Right-handed alpha
Helix 8
8
B
65 82Right-handed alpha
Helix 9
9
B
83 88Right-handed 310
Helix 10
10
B
117 120Right-handed 310
Helix 11
11
B
121 132Right-handed alpha
Helix 12
12
B
142 151Right-handed alpha
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There are 6 sheets in PDB entry 3HSD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
40 42anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
2 9anti-parallel
Strand 4
A
95 101anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
112 113anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
53 62anti-parallel
Strand 3
B
2 9anti-parallel
Strand 4
B
94 101anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
53 62anti-parallel
Strand 3
B
40 42anti-parallel
Strand 4
B
156 157anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
112 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il