Analysis of interatomic Contacts of Structural Units in PDB entry:
3HVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HVA entry

There are 2 chains in PDB entry 3HVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 266GLN 427
B
 VAL 266GLN 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3HVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
278 295Right-handed alpha
Helix 2
2
A
308 337Right-handed alpha
Helix 3
3
A
338 340Right-handed 310
Helix 4
4
A
358 375Right-handed alpha
Helix 5
5
A
402 419Right-handed alpha
Helix 6
6
B
278 295Right-handed alpha
Helix 7
7
B
308 337Right-handed alpha
Helix 8
8
B
358 376Right-handed alpha
Helix 9
9
B
402 421Right-handed alpha
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There are 4 sheets in PDB entry 3HVA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
341 344parallel
Strand 3
A
349 355anti-parallel
Strand 4
A
299 306anti-parallel
Strand 5
A
389 396anti-parallel
Strand 6
A
424 426parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
383 385anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 277first strand
Strand 2
B
340 344parallel
Strand 3
B
349 355anti-parallel
Strand 4
B
299 306anti-parallel
Strand 5
B
389 396anti-parallel
Strand 6
B
424 426parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 379first strand
Strand 2
B
384 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il