Analysis of interatomic Contacts of Structural Units in PDB entry:
3HVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HVM entry

There is 1 chain in PDB entry 3HVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3HVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 27Right-handed 310
Helix 2
2
A
28 45Right-handed alpha
Helix 3
3
A
57 66Right-handed alpha
Helix 4
4
A
81 86Right-handed alpha
Helix 5
5
A
104 109Right-handed alpha
Helix 6
6
A
114 116Right-handed 310
Helix 7
7
A
117 125Right-handed alpha
Helix 8
8
A
140 142Right-handed 310
Helix 9
9
A
156 160Right-handed alpha
Helix 10
10
A
169 182Right-handed alpha
Helix 11
11
A
202 205Right-handed 310
Helix 12
12
A
227 241Right-handed alpha
Helix 13
13
A
291 301Right-handed alpha
Helix 14
14
A
312 318Right-handed alpha
Helix 15
15
A
321 326Right-handed 310
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There are 5 sheets in PDB entry 3HVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
132 138parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
48 53parallel
Strand 3
A
13 17parallel
Strand 4
A
327 329anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
151 155anti-parallel
Strand 3
A
185 189parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 211first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
250 255parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
281 286anti-parallel
Strand 3
A
306 311parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il