Analysis of interatomic Contacts of Structural Units in PDB entry:
3HVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HVQ entry

There are 4 chains in PDB entry 3HVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7ASP 300
B
 LEU 7ASP 300
C
 PRO 436GLU 592
D
 GLN 435GLU 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3HVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
31 49Right-handed alpha
Helix 3
3
A
68 80Right-handed alpha
Helix 4
4
A
99 114Right-handed alpha
Helix 5
5
A
127 132Right-handed alpha
Helix 6
6
A
135 144Right-handed alpha
Helix 7
7
A
145 157Right-handed alpha
Helix 8
8
A
183 188Right-handed alpha
Helix 9
9
A
199 207Right-handed alpha
Helix 10
10
A
228 240Right-handed alpha
Helix 11
11
A
271 275Right-handed 310
Helix 12
12
B
8 18Right-handed alpha
Helix 13
13
B
31 49Right-handed alpha
Helix 14
14
B
68 80Right-handed alpha
Helix 15
15
B
99 114Right-handed alpha
Helix 16
16
B
127 132Right-handed alpha
Helix 17
17
B
135 144Right-handed alpha
Helix 18
18
B
145 157Right-handed alpha
Helix 19
19
B
183 188Right-handed alpha
Helix 20
20
B
199 207Right-handed alpha
Helix 21
21
B
228 240Right-handed alpha
Helix 22
22
B
271 275Right-handed 310
Helix 23
23
C
484 499Right-handed alpha
Helix 24
24
C
544 550Right-handed alpha
Helix 25
25
C
570 581Right-handed alpha
Helix 26
26
D
484 499Right-handed alpha
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There are 10 sheets in PDB entry 3HVQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
162 165parallel
Strand 3
A
169 172anti-parallel
Strand 4
A
243 246parallel
Strand 5
A
263 266parallel
Strand 6
A
255 258anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
87 89parallel
Strand 3
A
59 62parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
290 298anti-parallel
Strand 6
C
465 470parallel
Strand 7
C
440 443anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
87 89parallel
Strand 3
A
59 62parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
290 298anti-parallel
Strand 6
C
459 460parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
225 227parallel
Strand 3
A
216 218anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
162 165parallel
Strand 3
B
169 171anti-parallel
Strand 4
B
243 246parallel
Strand 5
B
263 266parallel
Strand 6
B
255 258anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
87 89parallel
Strand 3
B
59 62parallel
Strand 4
B
280 285anti-parallel
Strand 5
B
290 298anti-parallel
Strand 6
D
465 470parallel
Strand 7
D
441 443anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
87 89parallel
Strand 3
B
59 62parallel
Strand 4
B
280 285anti-parallel
Strand 5
B
290 298anti-parallel
Strand 6
D
459 460parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
225 227parallel
Strand 3
B
216 218anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
502 509first strand
Strand 2
C
584 591anti-parallel
Strand 3
C
557 561anti-parallel
Strand 4
C
564 565anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
517 522first strand
Strand 2
C
534 540anti-parallel
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