Analysis of interatomic Contacts of Structural Units in PDB entry:
3HVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HVZ entry

There are 6 chains in PDB entry 3HVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 396LYS 459
B
 GLU 396LYS 459
C
 GLU 396LYS 459
D
 GLU 396LYS 459
E
 GLU 397THR 458
F
 GLU 396LYS 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3HVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
415 424Right-handed alpha
Helix 2
2
A
424 430Right-handed alpha
Helix 3
3
B
415 424Right-handed alpha
Helix 4
4
B
424 430Right-handed alpha
Helix 5
5
C
415 424Right-handed alpha
Helix 6
6
C
424 430Right-handed alpha
Helix 7
7
D
415 424Right-handed alpha
Helix 8
8
D
424 430Right-handed alpha
Helix 9
9
E
415 424Right-handed alpha
Helix 10
10
E
424 430Right-handed alpha
Helix 11
11
F
415 424Right-handed alpha
Helix 12
12
F
424 430Right-handed alpha
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There are 12 sheets in PDB entry 3HVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 401first strand
Strand 2
A
407 411anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
431 436anti-parallel
Strand 3
A
453 457anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 401first strand
Strand 2
B
407 411anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 440first strand
Strand 2
B
431 436anti-parallel
Strand 3
B
453 457anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
397 401first strand
Strand 2
C
407 411anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
439 441first strand
Strand 2
C
431 436anti-parallel
Strand 3
C
453 457anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
397 401first strand
Strand 2
D
407 411anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
439 440first strand
Strand 2
D
431 436anti-parallel
Strand 3
D
453 457anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
398 401first strand
Strand 2
E
407 410anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
439 441first strand
Strand 2
E
431 436anti-parallel
Strand 3
E
456 457anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
398 401first strand
Strand 2
F
407 410anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
439 441first strand
Strand 2
F
431 436anti-parallel
Strand 3
F
453 457anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il