Analysis of interatomic Contacts of Structural Units in PDB entry:
3HXJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HXJ entry

There are 4 chains in PDB entry 3HXJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	ASN 322
B	LYS 12	ASN 322
C	LYS 12	ASN 322
D	ILE 11	ASN 322

There are 5 helices in PDB entry 3HXJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	56	58	Right-handed 310
Helix 2	2	A	86	93	Right-handed 310
Helix 3	3	B	89	93	Right-handed 310
Helix 4	4	D	56	58	Right-handed 310
Helix 5	5	D	86	90	Right-handed 310

There are 34 sheets in PDB entry 3HXJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	D	19	21	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	33	34	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	51	53	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	79	83	anti-parallel
Strand 3	A	317	321	anti-parallel
Strand 4	A	308	311	anti-parallel
Strand 5	A	301	302	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	72	73	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	109	113	anti-parallel
Strand 3	A	118	122	anti-parallel
Strand 4	A	128	133	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	150	153	anti-parallel
Strand 3	A	158	162	anti-parallel
Strand 4	A	168	173	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	190	193	anti-parallel
Strand 3	A	197	200	anti-parallel
Strand 4	A	206	210	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	228	230	anti-parallel
Strand 3	A	236	240	anti-parallel
Strand 4	A	246	251	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	A	276	280	anti-parallel
Strand 4	A	286	291	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	33	34	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	51	53	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	79	83	anti-parallel
Strand 3	B	317	321	anti-parallel
Strand 4	B	308	311	anti-parallel
Strand 5	B	301	302	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	109	113	anti-parallel
Strand 3	B	118	122	anti-parallel
Strand 4	B	128	133	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	144	first strand
Strand 2	B	150	153	anti-parallel
Strand 3	B	158	162	anti-parallel
Strand 4	B	168	173	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	190	193	anti-parallel
Strand 3	B	197	200	anti-parallel
Strand 4	B	206	210	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	228	231	anti-parallel
Strand 3	B	236	240	anti-parallel
Strand 4	B	246	251	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	268	271	anti-parallel
Strand 3	B	276	280	anti-parallel
Strand 4	B	286	291	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	33	34	anti-parallel
Strand 3	C	301	302	parallel
Strand 4	C	308	311	anti-parallel
Strand 5	C	317	321	anti-parallel
Strand 6	C	79	83	anti-parallel
Strand 7	C	60	63	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	51	53	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	109	113	anti-parallel
Strand 3	C	118	122	anti-parallel
Strand 4	C	128	133	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	150	153	anti-parallel
Strand 3	C	158	162	anti-parallel
Strand 4	C	168	173	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	190	193	anti-parallel
Strand 3	C	197	200	anti-parallel
Strand 4	C	206	210	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	228	231	anti-parallel
Strand 3	C	236	240	anti-parallel
Strand 4	C	246	251	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	268	271	anti-parallel
Strand 3	C	276	280	anti-parallel
Strand 4	C	286	291	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	33	34	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	51	53	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	79	83	anti-parallel
Strand 3	D	317	321	anti-parallel
Strand 4	D	308	311	anti-parallel
Strand 5	D	301	302	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	72	73	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	109	113	anti-parallel
Strand 3	D	118	122	anti-parallel
Strand 4	D	128	133	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	144	first strand
Strand 2	D	150	153	anti-parallel
Strand 3	D	158	162	anti-parallel
Strand 4	D	168	173	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	184	first strand
Strand 2	D	190	193	anti-parallel
Strand 3	D	197	200	anti-parallel
Strand 4	D	206	210	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	228	231	anti-parallel
Strand 3	D	236	240	anti-parallel
Strand 4	D	246	251	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	D	268	271	anti-parallel
Strand 3	D	276	280	anti-parallel
Strand 4	D	286	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HXJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HXJ