Analysis of interatomic Contacts of Structural Units in PDB entry:
3HYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HYJ entry

There are 2 chains in PDB entry 3HYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 193
D
 MET 1VAL 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3HYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
24 39Right-handed alpha
Helix 3
3
A
55 69Right-handed alpha
Helix 4
4
A
96 102Right-handed 310
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
140 156Right-handed alpha
Helix 7
7
A
174 185Right-handed alpha
Helix 8
8
D
8 18Right-handed alpha
Helix 9
9
D
24 39Right-handed alpha
Helix 10
10
D
55 69Right-handed alpha
Helix 11
11
D
107 122Right-handed alpha
Helix 12
12
D
140 156Right-handed alpha
Helix 13
13
D
174 186Right-handed alpha
Helix 14
14
D
192 198Right-handed alpha
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There are 4 sheets in PDB entry 3HYJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
D
73 80anti-parallel
Strand 3
D
86 94anti-parallel
Strand 4
D
48 53anti-parallel
Strand 5
D
40 41anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
88 93anti-parallel
Strand 4
A
73 79anti-parallel
Strand 5
D
2 3anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
167 172anti-parallel
Strand 4
A
160 164anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 125first strand
Strand 2
D
134 137anti-parallel
Strand 3
D
168 172anti-parallel
Strand 4
D
160 163anti-parallel
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