Analysis of interatomic Contacts of Structural Units in PDB entry:
3HZZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HZZ entry

There are 3 chains in PDB entry 3HZZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	VAL 447
B	MET 1	VAL 447
C	MET 1	TYR 404

There are 83 helices in PDB entry 3HZZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	12	Right-handed alpha
Helix 2	2	A	16	22	Right-handed alpha
Helix 3	3	A	37	39	Right-handed 310
Helix 4	4	A	46	50	Right-handed 310
Helix 5	5	A	51	56	Right-handed alpha
Helix 6	6	A	81	90	Right-handed alpha
Helix 7	7	A	95	103	Right-handed alpha
Helix 8	8	A	106	111	Right-handed alpha
Helix 9	9	A	154	158	Right-handed 310
Helix 10	10	A	160	164	Right-handed 310
Helix 11	11	A	198	204	Right-handed alpha
Helix 12	12	A	205	217	Right-handed alpha
Helix 13	13	A	237	250	Right-handed alpha
Helix 14	14	A	260	270	Right-handed alpha
Helix 15	15	A	293	309	Right-handed alpha
Helix 16	16	A	321	331	Right-handed alpha
Helix 17	17	A	353	358	Right-handed alpha
Helix 18	18	A	370	383	Right-handed alpha
Helix 19	19	A	398	408	Right-handed alpha
Helix 20	20	A	430	442	Right-handed alpha
Helix 21	21	A	443	445	Right-handed 310
Helix 22	22	B	1	12	Right-handed alpha
Helix 23	23	B	16	23	Right-handed alpha
Helix 24	24	B	37	39	Right-handed 310
Helix 25	25	B	46	50	Right-handed 310
Helix 26	26	B	51	55	Right-handed 310
Helix 27	27	B	81	89	Right-handed alpha
Helix 28	28	B	95	103	Right-handed alpha
Helix 29	29	B	106	111	Right-handed alpha
Helix 30	30	B	154	158	Right-handed 310
Helix 31	31	B	160	164	Right-handed 310
Helix 32	32	B	198	204	Right-handed alpha
Helix 33	33	B	205	217	Right-handed alpha
Helix 34	34	B	237	250	Right-handed alpha
Helix 35	35	B	260	270	Right-handed alpha
Helix 36	36	B	278	282	Right-handed alpha
Helix 37	37	B	293	309	Right-handed alpha
Helix 38	38	B	324	331	Right-handed alpha
Helix 39	39	B	353	358	Right-handed alpha
Helix 40	40	B	370	383	Right-handed alpha
Helix 41	41	B	398	409	Right-handed alpha
Helix 42	42	B	430	442	Right-handed alpha
Helix 43	43	C	2	12	Right-handed alpha
Helix 44	44	C	16	23	Right-handed alpha
Helix 45	45	C	37	39	Right-handed 310
Helix 46	46	C	46	50	Right-handed 310
Helix 47	47	C	51	56	Right-handed alpha
Helix 48	48	C	81	89	Right-handed alpha
Helix 49	49	C	95	103	Right-handed alpha
Helix 50	50	C	106	111	Right-handed alpha
Helix 51	51	C	154	164	Right-handed 310
Helix 52	52	C	198	204	Right-handed alpha
Helix 53	53	C	205	217	Right-handed alpha
Helix 54	54	C	237	250	Right-handed alpha
Helix 55	55	C	260	270	Right-handed alpha
Helix 56	56	C	278	282	Right-handed alpha
Helix 57	57	C	293	309	Right-handed alpha
Helix 58	58	C	321	331	Right-handed alpha
Helix 59	59	C	353	358	Right-handed alpha
Helix 60	60	C	370	383	Right-handed alpha
Helix 61	61	C	398	408	Right-handed alpha
Helix 62	62	C	430	442	Right-handed alpha
Helix 63	63	D	1	12	Right-handed alpha
Helix 64	64	D	16	23	Right-handed alpha
Helix 65	65	D	37	42	Right-handed 310
Helix 66	66	D	46	50	Right-handed 310
Helix 67	67	D	51	55	Right-handed 310
Helix 68	68	D	81	89	Right-handed alpha
Helix 69	69	D	95	103	Right-handed alpha
Helix 70	70	D	109	113	Right-handed 310
Helix 71	71	D	154	158	Right-handed 310
Helix 72	72	D	160	164	Right-handed 310
Helix 73	73	D	198	204	Right-handed alpha
Helix 74	74	D	205	217	Right-handed alpha
Helix 75	75	D	237	250	Right-handed alpha
Helix 76	76	D	260	270	Right-handed alpha
Helix 77	77	D	293	309	Right-handed alpha
Helix 78	78	D	321	331	Right-handed alpha
Helix 79	79	D	353	358	Right-handed alpha
Helix 80	80	D	370	383	Right-handed alpha
Helix 81	81	D	395	397	Right-handed 310
Helix 82	82	D	398	409	Right-handed alpha
Helix 83	83	D	430	442	Right-handed alpha

There are 20 sheets in PDB entry 3HZZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	28	35	anti-parallel
Strand 3	A	116	118	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	186	first strand
Strand 2	A	70	80	anti-parallel
Strand 3	A	124	130	anti-parallel
Strand 4	A	142	145	anti-parallel
Strand 5	A	190	192	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	186	first strand
Strand 2	A	70	80	anti-parallel
Strand 3	A	414	418	anti-parallel
Strand 4	A	390	395	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	168	169	anti-parallel

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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	277	first strand
Strand 2	A	253	258	parallel
Strand 3	A	229	232	parallel
Strand 4	A	313	318	parallel
Strand 5	A	332	340	parallel
Strand 6	A	362	365	parallel
Strand 7	B	362	365	anti-parallel
Strand 8	B	332	340	parallel
Strand 9	B	313	317	parallel
Strand 10	B	229	232	parallel
Strand 11	B	253	258	parallel
Strand 12	B	274	277	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	B	348	352	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	28	35	anti-parallel
Strand 3	B	116	118	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	186	first strand
Strand 2	B	70	80	anti-parallel
Strand 3	B	124	130	anti-parallel
Strand 4	B	142	145	anti-parallel
Strand 5	B	190	192	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	186	first strand
Strand 2	B	70	80	anti-parallel
Strand 3	B	414	418	anti-parallel
Strand 4	B	390	395	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	168	169	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	61	first strand
Strand 2	C	29	35	anti-parallel
Strand 3	C	116	118	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	186	first strand
Strand 2	C	70	79	anti-parallel
Strand 3	C	124	130	anti-parallel
Strand 4	C	142	145	anti-parallel
Strand 5	C	190	192	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	186	first strand
Strand 2	C	70	79	anti-parallel
Strand 3	C	414	418	anti-parallel
Strand 4	C	390	395	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	168	169	anti-parallel

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There are 12 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	277	first strand
Strand 2	C	253	258	parallel
Strand 3	C	229	232	parallel
Strand 4	C	313	318	parallel
Strand 5	C	332	340	parallel
Strand 6	C	362	365	parallel
Strand 7	D	362	365	anti-parallel
Strand 8	D	332	340	parallel
Strand 9	D	313	318	parallel
Strand 10	D	229	232	parallel
Strand 11	D	253	258	parallel
Strand 12	D	275	277	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	D	348	352	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	62	first strand
Strand 2	D	28	35	anti-parallel
Strand 3	D	116	118	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	186	first strand
Strand 2	D	70	79	anti-parallel
Strand 3	D	123	130	anti-parallel
Strand 4	D	142	145	anti-parallel
Strand 5	D	190	192	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	186	first strand
Strand 2	D	70	79	anti-parallel
Strand 3	D	414	418	anti-parallel
Strand 4	D	390	394	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	168	169	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HZZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HZZ