Analysis of interatomic Contacts of Structural Units in PDB entry:
3I05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3I05 entry

There are 2 chains in PDB entry 3I05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 16LYS 385
B
 ASN 16LYS 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3I05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 24Right-handed alpha
Helix 2
2
A
30 42Right-handed alpha
Helix 3
3
A
46 51Right-handed alpha
Helix 4
4
A
59 69Right-handed alpha
Helix 5
5
A
87 90Right-handed 310
Helix 6
6
A
91 105Right-handed alpha
Helix 7
7
A
113 121Right-handed alpha
Helix 8
8
A
124 141Right-handed alpha
Helix 9
9
A
154 158Right-handed alpha
Helix 10
10
A
161 172Right-handed alpha
Helix 11
11
A
173 182Right-handed alpha
Helix 12
12
A
188 200Right-handed alpha
Helix 13
13
A
201 207Right-handed 310
Helix 14
14
A
212 216Right-handed 310
Helix 15
15
A
228 238Right-handed alpha
Helix 16
16
A
239 243Right-handed 310
Helix 17
17
A
278 287Right-handed alpha
Helix 18
18
A
311 321Right-handed alpha
Helix 19
19
A
324 331Right-handed alpha
Helix 20
20
A
340 364Right-handed alpha
Helix 21
21
A
367 376Right-handed alpha
Helix 22
22
B
16 24Right-handed alpha
Helix 23
23
B
30 42Right-handed alpha
Helix 24
24
B
46 51Right-handed alpha
Helix 25
25
B
59 69Right-handed alpha
Helix 26
26
B
87 90Right-handed 310
Helix 27
27
B
91 105Right-handed alpha
Helix 28
28
B
113 121Right-handed alpha
Helix 29
29
B
124 141Right-handed alpha
Helix 30
30
B
154 158Right-handed alpha
Helix 31
31
B
161 172Right-handed alpha
Helix 32
32
B
173 182Right-handed alpha
Helix 33
33
B
188 200Right-handed alpha
Helix 34
34
B
201 207Right-handed 310
Helix 35
35
B
212 216Right-handed 310
Helix 36
36
B
228 238Right-handed alpha
Helix 37
37
B
239 243Right-handed 310
Helix 38
38
B
278 287Right-handed alpha
Helix 39
39
B
313 321Right-handed alpha
Helix 40
40
B
323 331Right-handed alpha
Helix 41
41
B
340 364Right-handed alpha
Helix 42
42
B
367 376Right-handed alpha
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There are 2 sheets in PDB entry 3I05. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
54 58anti-parallel
Strand 3
A
248 252anti-parallel
Strand 4
A
219 225parallel
Strand 5
A
73 79parallel
Strand 6
A
108 112parallel
Strand 7
A
149 153parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
54 58anti-parallel
Strand 3
B
248 252anti-parallel
Strand 4
B
219 225parallel
Strand 5
B
73 79parallel
Strand 6
B
108 112parallel
Strand 7
B
149 153parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il