Analysis of interatomic Contacts of Structural Units in PDB entry:
3I08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3I08 entry

There are 4 chains in PDB entry 3I08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1449GLY 1622
B
 MET 1670PRO 1729
C
 ALA 1449GLY 1622
D
 VAL 1672PRO 1729
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3I08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1454 1459Right-handed alpha
Helix 2
2
A
1465 1469Right-handed 310
Helix 3
3
A
1470 1472Right-handed 310
Helix 4
4
A
1473 1478Right-handed alpha
Helix 5
5
A
1492 1500Right-handed 310
Helix 6
6
A
1507 1511Right-handed 310
Helix 7
7
A
1512 1521Right-handed 310
Helix 8
8
A
1530 1539Right-handed alpha
Helix 9
9
A
1547 1551Right-handed 310
Helix 10
10
A
1552 1561Right-handed 310
Helix 11
11
A
1582 1589Right-handed alpha
Helix 12
12
A
1589 1602Right-handed alpha
Helix 13
13
B
1685 1690Right-handed alpha
Helix 14
14
B
1696 1710Right-handed alpha
Helix 15
15
C
1454 1459Right-handed alpha
Helix 16
16
C
1465 1469Right-handed 310
Helix 17
17
C
1475 1479Right-handed 310
Helix 18
18
C
1486 1491Right-handed 310
Helix 19
19
C
1492 1500Right-handed 310
Helix 20
20
C
1507 1511Right-handed 310
Helix 21
21
C
1512 1521Right-handed 310
Helix 22
22
C
1530 1541Right-handed alpha
Helix 23
23
C
1547 1551Right-handed 310
Helix 24
24
C
1552 1561Right-handed 310
Helix 25
25
C
1582 1589Right-handed alpha
Helix 26
26
C
1589 1602Right-handed alpha
Helix 27
27
D
1685 1690Right-handed alpha
Helix 28
28
D
1696 1710Right-handed alpha
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There are 4 sheets in PDB entry 3I08. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1604 1607first strand
Strand 2
B
1674 1682anti-parallel
Strand 3
A
1617 1620anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1604 1607first strand
Strand 2
B
1674 1682anti-parallel
Strand 3
A
1574 1580anti-parallel
Strand 4
B
1718 1725anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1604 1607first strand
Strand 2
D
1674 1682anti-parallel
Strand 3
C
1617 1620anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1604 1607first strand
Strand 2
D
1674 1682anti-parallel
Strand 3
C
1575 1579anti-parallel
Strand 4
D
1719 1724anti-parallel
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