Analysis of interatomic Contacts of Structural Units in PDB entry:
3I0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3I0M entry

There is 1 chain in PDB entry 3I0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1TYR 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3I0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 63Right-handed alpha
Helix 2
2
A
122 136Right-handed alpha
Helix 3
3
A
162 171Right-handed alpha
Helix 4
4
A
177 187Right-handed alpha
Helix 5
5
A
187 194Right-handed alpha
Helix 6
6
A
195 198Right-handed 310
Helix 7
7
A
200 212Right-handed alpha
Helix 8
8
A
218 223Right-handed alpha
Helix 9
9
A
237 247Right-handed alpha
Helix 10
10
A
261 268Right-handed alpha
Helix 11
11
A
274 281Right-handed alpha
Helix 12
12
A
294 303Right-handed alpha
Helix 13
13
A
305 315Right-handed alpha
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There are 4 sheets in PDB entry 3I0M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
109 113anti-parallel
Strand 4
A
97 102anti-parallel
Strand 5
A
79 81anti-parallel
Strand 6
A
84 86anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
21 26parallel
Strand 3
A
48 52anti-parallel
Strand 4
A
68 72anti-parallel
Strand 5
A
91 93anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
118 120parallel
Strand 3
A
150 152parallel
Strand 4
A
174 176parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
230 233parallel
Strand 3
A
270 273parallel
Strand 4
A
290 293parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il