Analysis of interatomic Contacts of Structural Units in PDB entry:
3I16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3I16 entry

There are 4 chains in PDB entry 3I16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LYS 426
B
 GLY 0LYS 426
C
 GLY 0LYS 426
D
 GLY 0LYS 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 3I16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
15 29Right-handed alpha
Helix 3
3
A
29 54Right-handed alpha
Helix 4
4
A
57 61Right-handed 310
Helix 5
5
A
71 86Right-handed alpha
Helix 6
6
A
98 111Right-handed alpha
Helix 7
7
A
125 127Right-handed 310
Helix 8
8
A
128 133Right-handed alpha
Helix 9
9
A
143 147Right-handed 310
Helix 10
10
A
162 172Right-handed alpha
Helix 11
11
A
194 209Right-handed alpha
Helix 12
12
A
228 233Right-handed 310
Helix 13
13
A
243 247Right-handed 310
Helix 14
14
A
259 271Right-handed alpha
Helix 15
15
A
275 279Right-handed 310
Helix 16
16
A
285 317Right-handed alpha
Helix 17
17
A
340 354Right-handed alpha
Helix 18
18
A
409 423Right-handed alpha
Helix 19
19
B
2 11Right-handed alpha
Helix 20
20
B
15 54Right-handed alpha
Helix 21
21
B
57 61Right-handed 310
Helix 22
22
B
71 86Right-handed alpha
Helix 23
23
B
98 111Right-handed alpha
Helix 24
24
B
127 133Right-handed alpha
Helix 25
25
B
143 147Right-handed 310
Helix 26
26
B
162 173Right-handed alpha
Helix 27
27
B
194 209Right-handed alpha
Helix 28
28
B
228 233Right-handed 310
Helix 29
29
B
243 247Right-handed 310
Helix 30
30
B
259 271Right-handed alpha
Helix 31
31
B
275 279Right-handed 310
Helix 32
32
B
285 318Right-handed alpha
Helix 33
33
B
340 354Right-handed alpha
Helix 34
34
B
409 425Right-handed alpha
Helix 35
35
C
2 11Right-handed alpha
Helix 36
36
C
15 54Right-handed alpha
Helix 37
37
C
57 61Right-handed 310
Helix 38
38
C
71 86Right-handed alpha
Helix 39
39
C
98 111Right-handed alpha
Helix 40
40
C
127 133Right-handed alpha
Helix 41
41
C
143 147Right-handed 310
Helix 42
42
C
162 173Right-handed alpha
Helix 43
43
C
194 207Right-handed alpha
Helix 44
44
C
228 233Right-handed 310
Helix 45
45
C
243 247Right-handed 310
Helix 46
46
C
259 271Right-handed alpha
Helix 47
47
C
275 279Right-handed 310
Helix 48
48
C
285 318Right-handed alpha
Helix 49
49
C
340 354Right-handed alpha
Helix 50
50
C
409 425Right-handed alpha
Helix 51
51
D
2 12Right-handed alpha
Helix 52
52
D
15 54Right-handed alpha
Helix 53
53
D
57 61Right-handed 310
Helix 54
54
D
71 86Right-handed alpha
Helix 55
55
D
98 111Right-handed alpha
Helix 56
56
D
127 133Right-handed alpha
Helix 57
57
D
143 147Right-handed 310
Helix 58
58
D
162 173Right-handed alpha
Helix 59
59
D
194 209Right-handed alpha
Helix 60
60
D
228 233Right-handed 310
Helix 61
61
D
243 247Right-handed 310
Helix 62
62
D
259 271Right-handed alpha
Helix 63
63
D
285 317Right-handed alpha
Helix 64
64
D
340 354Right-handed alpha
Helix 65
65
D
409 423Right-handed alpha
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There are 8 sheets in PDB entry 3I16. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
236 240anti-parallel
Strand 4
A
213 217parallel
Strand 5
A
176 182parallel
Strand 6
A
116 119parallel
Strand 7
A
149 152parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
334 337anti-parallel
Strand 3
A
401 405anti-parallel
Strand 4
A
391 395anti-parallel
Strand 5
A
375 379anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 93first strand
Strand 2
B
254 258anti-parallel
Strand 3
B
236 240anti-parallel
Strand 4
B
213 217parallel
Strand 5
B
176 182parallel
Strand 6
B
116 119parallel
Strand 7
B
149 152parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 322first strand
Strand 2
B
334 337anti-parallel
Strand 3
B
401 405anti-parallel
Strand 4
B
391 395anti-parallel
Strand 5
B
375 378anti-parallel
Strand 6
B
365 366anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 93first strand
Strand 2
C
254 258anti-parallel
Strand 3
C
236 240anti-parallel
Strand 4
C
213 217parallel
Strand 5
C
176 182parallel
Strand 6
C
116 119parallel
Strand 7
C
149 152parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
320 322first strand
Strand 2
C
334 337anti-parallel
Strand 3
C
401 405anti-parallel
Strand 4
C
391 395anti-parallel
Strand 5
C
375 379anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 93first strand
Strand 2
D
254 258anti-parallel
Strand 3
D
236 240anti-parallel
Strand 4
D
213 217parallel
Strand 5
D
176 182parallel
Strand 6
D
116 119parallel
Strand 7
D
149 152parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
320 322first strand
Strand 2
D
334 337anti-parallel
Strand 3
D
401 405anti-parallel
Strand 4
D
391 395anti-parallel
Strand 5
D
375 378anti-parallel
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