Analysis of interatomic Contacts of Structural Units in PDB entry:
3I4M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3I4M entry

There are 17 chains in PDB entry 3I4M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	PRO 1455
B	ASP 20	PHE 1224
C	MET 1	VAL 270
D	MET 1	TYR 221
E	ASP 2	MET 215
F	THR 68	LEU 155
G	MET 1	ILE 171
H	MET 1	ARG 146
I	THR 2	LYS 117
J	MET 1	PRO 65
K	MET 1	ALA 116
L	THR 24	ARG 70
T	C 7	A 18
T	G 20	C 22
T	G 24	C 27
N	A 1	C 11
P	U 2	U 11

There are129 helices in PDB entry 3I4M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	31	Right-handed alpha
Helix 2	2	A	95	104	Right-handed alpha
Helix 3	3	A	119	126	Right-handed alpha
Helix 4	4	A	132	143	Right-handed alpha
Helix 5	5	A	203	214	Right-handed alpha
Helix 6	6	A	215	223	Right-handed alpha
Helix 7	7	A	230	233	Right-handed 310
Helix 8	8	A	243	247	Right-handed 310
Helix 9	9	A	260	282	Right-handed alpha
Helix 10	10	A	289	294	Right-handed alpha
Helix 11	11	A	295	303	Right-handed alpha
Helix 12	12	A	324	330	Right-handed alpha
Helix 13	13	A	368	372	Right-handed alpha
Helix 14	14	A	384	395	Right-handed alpha
Helix 15	15	A	451	453	Right-handed 310
Helix 16	16	A	472	479	Right-handed 310
Helix 17	17	A	494	505	Right-handed alpha
Helix 18	18	A	506	511	Right-handed alpha
Helix 19	19	A	524	536	Right-handed alpha
Helix 20	20	A	543	553	Right-handed alpha
Helix 21	21	A	574	579	Right-handed alpha
Helix 22	22	A	628	638	Right-handed alpha
Helix 23	23	A	638	661	Right-handed alpha
Helix 24	24	A	665	669	Right-handed 310
Helix 25	25	A	672	696	Right-handed alpha
Helix 26	26	A	709	735	Right-handed alpha
Helix 27	27	A	741	750	Right-handed alpha
Helix 28	28	A	754	763	Right-handed alpha
Helix 29	29	A	809	828	Right-handed alpha
Helix 30	30	A	831	846	Right-handed alpha
Helix 31	31	A	867	871	Right-handed 310
Helix 32	32	A	884	887	Right-handed 310
Helix 33	33	A	889	898	Right-handed alpha
Helix 34	34	A	924	947	Right-handed alpha
Helix 35	35	A	959	971	Right-handed alpha
Helix 36	36	A	984	996	Right-handed alpha
Helix 37	37	A	1004	1016	Right-handed alpha
Helix 38	38	A	1016	1026	Right-handed alpha
Helix 39	39	A	1027	1034	Right-handed alpha
Helix 40	40	A	1038	1057	Right-handed alpha
Helix 41	41	A	1063	1074	Right-handed alpha
Helix 42	42	A	1096	1106	Right-handed alpha
Helix 43	43	A	1127	1137	Right-handed alpha
Helix 44	44	A	1142	1146	Right-handed alpha
Helix 45	45	A	1166	1170	Right-handed 310
Helix 46	46	A	1200	1205	Right-handed alpha
Helix 47	47	A	1208	1221	Right-handed alpha
Helix 48	48	A	1261	1269	Right-handed alpha
Helix 49	49	A	1331	1339	Right-handed alpha
Helix 50	50	A	1340	1358	Right-handed alpha
Helix 51	51	A	1365	1377	Right-handed alpha
Helix 52	52	A	1395	1401	Right-handed alpha
Helix 53	53	A	1404	1415	Right-handed alpha
Helix 54	54	A	1423	1431	Right-handed alpha
Helix 55	55	A	1436	1439	Right-handed 310
Helix 56	56	A	1448	1453	Right-handed alpha
Helix 57	57	B	26	41	Right-handed alpha
Helix 58	58	B	44	57	Right-handed alpha
Helix 59	59	B	57	64	Right-handed alpha
Helix 60	60	B	113	120	Right-handed alpha
Helix 61	61	B	179	184	Right-handed alpha
Helix 62	62	B	186	193	Right-handed alpha
Helix 63	63	B	282	289	Right-handed alpha
Helix 64	64	B	296	302	Right-handed alpha
Helix 65	65	B	307	320	Right-handed alpha
Helix 66	66	B	326	333	Right-handed alpha
Helix 67	67	B	346	359	Right-handed alpha
Helix 68	68	B	370	390	Right-handed alpha
Helix 69	69	B	400	402	Right-handed 310
Helix 70	70	B	408	426	Right-handed alpha
Helix 71	71	B	426	433	Right-handed alpha
Helix 72	72	B	450	464	Right-handed alpha
Helix 73	73	B	487	496	Right-handed alpha
Helix 74	74	B	551	559	Right-handed alpha
Helix 75	75	B	565	569	Right-handed 310
Helix 76	76	B	592	605	Right-handed alpha
Helix 77	77	B	619	622	Right-handed 310
Helix 78	78	B	654	667	Right-handed alpha
Helix 79	79	B	680	687	Right-handed alpha
Helix 80	80	B	694	699	Right-handed alpha
Helix 81	81	B	744	748	Right-handed 310
Helix 82	82	B	750	755	Right-handed alpha
Helix 83	83	B	765	774	Right-handed alpha
Helix 84	84	B	784	788	Right-handed 310
Helix 85	85	B	808	813	Right-handed alpha
Helix 86	86	B	843	848	Right-handed alpha
Helix 87	87	B	1013	1017	Right-handed 310
Helix 88	88	B	1022	1039	Right-handed alpha
Helix 89	89	B	1051	1059	Right-handed alpha
Helix 90	90	B	1060	1063	Right-handed 310
Helix 91	91	B	1098	1102	Right-handed 310
Helix 92	92	B	1131	1142	Right-handed alpha
Helix 93	93	B	1143	1152	Right-handed alpha
Helix 94	94	B	1197	1209	Right-handed alpha
Helix 95	95	C	26	40	Right-handed alpha
Helix 96	96	C	59	70	Right-handed alpha
Helix 97	97	C	116	118	Right-handed 310
Helix 98	98	C	167	171	Right-handed 310
Helix 99	99	C	196	201	Right-handed alpha
Helix 100	100	C	241	268	Right-handed alpha
Helix 101	101	D	30	34	Right-handed 310
Helix 102	102	D	53	73	Right-handed alpha
Helix 103	103	D	119	134	Right-handed alpha
Helix 104	104	D	138	151	Right-handed alpha
Helix 105	105	D	156	168	Right-handed alpha
Helix 106	106	D	173	183	Right-handed alpha
Helix 107	107	D	187	195	Right-handed alpha
Helix 108	108	D	203	218	Right-handed alpha
Helix 109	109	E	4	26	Right-handed alpha
Helix 110	110	E	31	36	Right-handed alpha
Helix 111	111	E	39	44	Right-handed alpha
Helix 112	112	E	54	58	Right-handed 310
Helix 113	113	E	65	70	Right-handed 310
Helix 114	114	E	92	103	Right-handed alpha
Helix 115	115	E	137	141	Right-handed alpha
Helix 116	116	E	157	167	Right-handed alpha
Helix 117	117	E	182	188	Right-handed alpha
Helix 118	118	F	86	102	Right-handed alpha
Helix 119	119	F	116	125	Right-handed alpha
Helix 120	120	G	21	33	Right-handed alpha
Helix 121	121	G	50	54	Right-handed 310
Helix 122	122	I	59	64	Right-handed 310
Helix 123	123	J	16	27	Right-handed alpha
Helix 124	124	J	31	39	Right-handed alpha
Helix 125	125	J	43	53	Right-handed alpha
Helix 126	126	J	56	62	Right-handed alpha
Helix 127	127	K	5	10	Right-handed 310
Helix 128	128	K	42	51	Right-handed alpha
Helix 129	129	K	82	110	Right-handed alpha

There are 50 sheets in PDB entry 3I4M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	B	1191	1196	parallel
Strand 3	B	1158	1163	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	B	1212	1217	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	235	238	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	162	163	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	180	184	anti-parallel
Strand 3	A	199	202	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	B	1129	1130	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	363	367	anti-parallel
Strand 3	A	455	463	parallel
Strand 4	A	441	445	anti-parallel
Strand 5	A	486	490	anti-parallel
Strand 6	A	348	352	anti-parallel
Strand 7	B	1104	1106	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	434	435	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	412	414	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	571	573	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	589	first strand
Strand 2	A	606	608	anti-parallel
Strand 3	A	611	614	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	770	first strand
Strand 2	A	773	774	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel
Strand 3	A	863	865	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	882	first strand
Strand 2	A	953	956	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1118	1119	first strand
Strand 2	A	1303	1307	anti-parallel
Strand 3	A	1283	1287	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1194	1197	first strand
Strand 2	A	1147	1153	anti-parallel
Strand 3	I	42	45	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1226	first strand
Strand 2	A	1240	1241	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	147	first strand
Strand 2	F	132	137	anti-parallel
Strand 3	A	1441	1445	anti-parallel
Strand 4	G	59	61	anti-parallel
Strand 5	G	68	71	anti-parallel
Strand 6	G	10	13	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	97	first strand
Strand 2	B	127	132	anti-parallel
Strand 3	B	165	169	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	211	anti-parallel
Strand 3	B	481	482	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	497	499	parallel
Strand 4	B	536	538	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	236	243	anti-parallel
Strand 3	B	251	256	anti-parallel
Strand 4	B	270	272	anti-parallel
Strand 5	B	279	281	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	690	693	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	740	742	anti-parallel
Strand 4	B	703	704	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	588	first strand
Strand 2	B	580	582	anti-parallel
Strand 3	B	624	627	parallel
Strand 4	B	614	617	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1010	1012	first strand
Strand 2	B	821	827	parallel
Strand 3	B	1086	1092	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	840	842	first strand
Strand 2	B	992	994	parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	856	862	first strand
Strand 2	B	963	969	anti-parallel
Strand 3	B	947	955	anti-parallel
Strand 4	B	904	905	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	916	first strand
Strand 2	B	935	936	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	979	980	first strand
Strand 2	B	988	989	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	22	first strand
Strand 2	C	228	232	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	119	120	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	45	49	anti-parallel
Strand 4	L	67	68	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	143	147	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	44	46	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	78	79	anti-parallel
Strand 3	E	107	108	parallel
Strand 4	E	131	132	parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	112	first strand
Strand 2	E	135	136	parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	206	214	parallel
Strand 3	E	195	202	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	74	79	anti-parallel
Strand 3	G	44	48	anti-parallel

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There are 7 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	142	151	anti-parallel
Strand 3	G	158	162	anti-parallel
Strand 4	G	106	111	parallel
Strand 5	G	98	103	anti-parallel
Strand 6	G	85	94	anti-parallel
Strand 7	G	142	151	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	132	first strand
Strand 2	G	135	137	anti-parallel

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There are 7 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	56	first strand
Strand 2	H	9	16	anti-parallel
Strand 3	H	23	30	anti-parallel
Strand 4	H	38	43	anti-parallel
Strand 5	H	121	124	anti-parallel
Strand 6	H	115	118	anti-parallel
Strand 7	H	100	101	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	141	143	anti-parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	107	first strand
Strand 2	H	111	112	anti-parallel

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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	18	first strand
Strand 2	I	25	28	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 3 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	84	first strand
Strand 2	I	100	103	anti-parallel
Strand 3	I	109	111	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	22	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3I4M

Analysis of interatomic Contacts of Structural Units in PDB entry:
3I4M