Analysis of interatomic Contacts of Structural Units in PDB entry:
3I52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3I52 entry

There is 1 chain in PDB entry 3I52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11LYS 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3I52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
54 60Right-handed alpha
Helix 3
3
A
71 82Right-handed alpha
Helix 4
4
A
95 97Right-handed 310
Helix 5
5
A
98 110Right-handed alpha
Helix 6
6
A
132 150Right-handed alpha
Helix 7
7
A
172 176Right-handed 310
Helix 8
8
A
197 209Right-handed alpha
Helix 9
9
A
210 215Right-handed 310
Helix 10
10
A
223 225Right-handed 310
Helix 11
11
A
229 242Right-handed alpha
Helix 12
12
A
251 261Right-handed alpha
Helix 13
13
A
265 278Right-handed alpha
Helix 14
14
A
295 299Right-handed alpha
Helix 15
15
A
306 315Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3I52. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
37 41parallel
Strand 3
A
13 16parallel
Strand 4
A
86 89parallel
Strand 5
A
114 116parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
217 220parallel
Strand 3
A
292 294parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
193 196parallel
Strand 3
A
227 228anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
247 250parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il