Analysis of interatomic Contacts of Structural Units in PDB entry:
3I5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3I5M entry

There is 1 chain in PDB entry 3I5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11LYS 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3I5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
47 60Right-handed alpha
Helix 3
3
A
71 83Right-handed alpha
Helix 4
4
A
95 97Right-handed 310
Helix 5
5
A
98 110Right-handed alpha
Helix 6
6
A
132 150Right-handed alpha
Helix 7
7
A
197 209Right-handed alpha
Helix 8
8
A
210 215Right-handed 310
Helix 9
9
A
223 225Right-handed 310
Helix 10
10
A
229 242Right-handed alpha
Helix 11
11
A
251 260Right-handed alpha
Helix 12
12
A
265 278Right-handed alpha
Helix 13
13
A
295 299Right-handed alpha
Helix 14
14
A
306 315Right-handed alpha
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There are 4 sheets in PDB entry 3I5M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
37 41parallel
Strand 3
A
13 16parallel
Strand 4
A
86 89parallel
Strand 5
A
114 116parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
217 220parallel
Strand 3
A
292 294parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
193 196parallel
Strand 3
A
227 228anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
247 250parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il