Analysis of interatomic Contacts of Structural Units in PDB entry:
3I94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3I94 entry

There is 1 chain in PDB entry 3I94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1006GLN 1248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3I94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1007 1011Right-handed 310
Helix 2
2
A
1013 1017Right-handed 310
Helix 3
3
A
1018 1033Right-handed alpha
Helix 4
4
A
1042 1046Right-handed 310
Helix 5
5
A
1095 1098Right-handed 310
Helix 6
6
A
1130 1140Right-handed alpha
Helix 7
7
A
1152 1158Right-handed 310
Helix 8
8
A
1169 1194Right-handed alpha
Helix 9
9
A
1198 1217Right-handed alpha
Helix 10
10
A
1219 1231Right-handed alpha
Helix 11
11
A
1231 1242Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3I94. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1038 1039first strand
Strand 2
A
1058 1066anti-parallel
Strand 3
A
1049 1051anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1038 1039first strand
Strand 2
A
1058 1066anti-parallel
Strand 3
A
1070 1080anti-parallel
Strand 4
A
1084 1093anti-parallel
Strand 5
A
1101 1109anti-parallel
Strand 6
A
1112 1121anti-parallel
Strand 7
A
1163 1165anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il