Analysis of interatomic Contacts of Structural Units in PDB entry:
3ICJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ICJ entry

There are 2 chains in PDB entry 3ICJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 34VAL 293
A
 LEU 295LYS 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3ICJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 80Right-handed alpha
Helix 2
2
A
101 111Right-handed alpha
Helix 3
3
A
119 129Right-handed alpha
Helix 4
4
A
141 146Right-handed alpha
Helix 5
5
A
150 155Right-handed alpha
Helix 6
6
A
174 182Right-handed alpha
Helix 7
7
A
198 211Right-handed alpha
Helix 8
8
A
214 232Right-handed alpha
Helix 9
9
A
243 256Right-handed alpha
Helix 10
10
A
271 278Right-handed alpha
Helix 11
11
A
325 337Right-handed alpha
Helix 12
12
A
349 364Right-handed alpha
Helix 13
13
A
376 378Right-handed 310
Helix 14
14
A
379 387Right-handed alpha
Helix 15
15
A
395 400Right-handed alpha
Helix 16
16
A
402 412Right-handed alpha
Helix 17
17
A
413 415Right-handed 310
Helix 18
18
A
417 425Right-handed alpha
Helix 19
19
A
439 450Right-handed alpha
Helix 20
20
A
454 458Right-handed 310
Helix 21
21
A
460 468Right-handed alpha
Helix 22
22
A
469 476Right-handed alpha
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There are 5 sheets in PDB entry 3ICJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
35 39anti-parallel
Strand 4
A
82 85parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
90 93parallel
Strand 4
A
492 495anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
234 242parallel
Strand 3
A
262 267parallel
Strand 4
A
288 296parallel
Strand 5
A
283 284anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
234 242parallel
Strand 3
A
262 267parallel
Strand 4
A
288 296parallel
Strand 5
A
342 347parallel
Strand 6
A
368 371parallel
Strand 7
A
389 392parallel
Strand 8
A
427 429parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
135 140parallel
Strand 3
A
161 165parallel
Strand 4
A
170 173anti-parallel
Strand 5
A
195 197anti-parallel
Strand 6
A
189 190anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il