Analysis of interatomic Contacts of Structural Units in PDB entry:
3IF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IF5 entry

There is 1 chain in PDB entry 3IF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3IF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 17Right-handed alpha
Helix 2
2
A
28 33Right-handed alpha
Helix 3
3
A
63 65Right-handed 310
Helix 4
4
A
66 79Right-handed alpha
Helix 5
5
A
79 85Right-handed alpha
Helix 6
6
A
98 103Right-handed alpha
Helix 7
7
A
113 124Right-handed alpha
Helix 8
8
A
130 147Right-handed alpha
Helix 9
9
A
153 162Right-handed alpha
Helix 10
10
A
164 177Right-handed alpha
Helix 11
11
A
183 195Right-handed alpha
Helix 12
12
A
200 213Right-handed alpha
Helix 13
13
A
226 241Right-handed alpha
Helix 14
14
A
242 244Right-handed 310
Helix 15
15
A
245 253Right-handed alpha
Helix 16
16
A
288 303Right-handed alpha
Helix 17
17
A
312 315Right-handed 310
Helix 18
18
A
336 349Right-handed alpha
Helix 19
19
A
418 435Right-handed alpha
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There are 3 sheets in PDB entry 3IF5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
273 278anti-parallel
Strand 4
A
264 269anti-parallel
Strand 5
A
257 259anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
198 199anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 322first strand
Strand 2
A
326 335anti-parallel
Strand 3
A
406 417parallel
Strand 4
A
438 442parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il