Analysis of interatomic Contacts of Structural Units in PDB entry:
3II9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3II9 entry

There are 4 chains in PDB entry 3II9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3PHE 395
B
 ALA 4PHE 395
C
 ALA 4PHE 395
D
 ALA 3PHE 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 67 helices in PDB entry 3II9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed 310
Helix 2
2
A
19 37Right-handed alpha
Helix 3
3
A
37 48Right-handed alpha
Helix 4
4
A
52 61Right-handed alpha
Helix 5
5
A
69 73Right-handed 310
Helix 6
6
A
78 91Right-handed alpha
Helix 7
7
A
93 106Right-handed alpha
Helix 8
8
A
107 115Right-handed alpha
Helix 9
9
A
116 129Right-handed alpha
Helix 10
10
A
173 176Right-handed 310
Helix 11
11
A
234 236Right-handed 310
Helix 12
12
A
243 279Right-handed alpha
Helix 13
13
A
289 320Right-handed alpha
Helix 14
14
A
323 350Right-handed alpha
Helix 15
15
A
355 357Right-handed 310
Helix 16
16
A
358 375Right-handed alpha
Helix 17
17
A
378 390Right-handed alpha
Helix 18
18
B
13 18Right-handed alpha
Helix 19
19
B
19 37Right-handed alpha
Helix 20
20
B
37 48Right-handed alpha
Helix 21
21
B
52 62Right-handed alpha
Helix 22
22
B
69 73Right-handed 310
Helix 23
23
B
78 93Right-handed alpha
Helix 24
24
B
93 106Right-handed alpha
Helix 25
25
B
107 115Right-handed alpha
Helix 26
26
B
116 129Right-handed alpha
Helix 27
27
B
173 176Right-handed 310
Helix 28
28
B
234 236Right-handed 310
Helix 29
29
B
243 279Right-handed alpha
Helix 30
30
B
289 320Right-handed alpha
Helix 31
31
B
323 349Right-handed alpha
Helix 32
32
B
359 373Right-handed alpha
Helix 33
33
B
378 390Right-handed alpha
Helix 34
34
C
13 18Right-handed 310
Helix 35
35
C
19 37Right-handed alpha
Helix 36
36
C
37 48Right-handed alpha
Helix 37
37
C
53 62Right-handed alpha
Helix 38
38
C
69 73Right-handed 310
Helix 39
39
C
78 93Right-handed alpha
Helix 40
40
C
93 106Right-handed alpha
Helix 41
41
C
107 115Right-handed alpha
Helix 42
42
C
116 129Right-handed alpha
Helix 43
43
C
140 144Right-handed 310
Helix 44
44
C
173 176Right-handed 310
Helix 45
45
C
234 236Right-handed 310
Helix 46
46
C
243 279Right-handed alpha
Helix 47
47
C
289 320Right-handed alpha
Helix 48
48
C
323 349Right-handed alpha
Helix 49
49
C
355 357Right-handed 310
Helix 50
50
C
358 373Right-handed alpha
Helix 51
51
C
376 390Right-handed alpha
Helix 52
52
D
13 18Right-handed alpha
Helix 53
53
D
19 37Right-handed alpha
Helix 54
54
D
37 48Right-handed alpha
Helix 55
55
D
52 61Right-handed alpha
Helix 56
56
D
69 73Right-handed 310
Helix 57
57
D
78 93Right-handed alpha
Helix 58
58
D
93 106Right-handed alpha
Helix 59
59
D
107 115Right-handed alpha
Helix 60
60
D
116 129Right-handed alpha
Helix 61
61
D
173 176Right-handed 310
Helix 62
62
D
234 236Right-handed 310
Helix 63
63
D
243 279Right-handed alpha
Helix 64
64
D
289 320Right-handed alpha
Helix 65
65
D
323 349Right-handed alpha
Helix 66
66
D
358 373Right-handed alpha
Helix 67
67
D
378 390Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3II9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
178 187parallel
Strand 3
A
190 199anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
178 187parallel
Strand 3
A
153 157parallel
Strand 4
A
160 171anti-parallel
Strand 5
A
221 232anti-parallel
Strand 6
A
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
284 285anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
178 185parallel
Strand 3
B
192 199anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
178 185parallel
Strand 3
B
153 157parallel
Strand 4
B
160 171anti-parallel
Strand 5
B
221 232anti-parallel
Strand 6
B
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 281first strand
Strand 2
B
284 285anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 137first strand
Strand 2
C
178 187parallel
Strand 3
C
153 157parallel
Strand 4
C
160 171anti-parallel
Strand 5
C
221 232anti-parallel
Strand 6
C
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 199first strand
Strand 2
C
178 187anti-parallel
Strand 3
C
153 157parallel
Strand 4
C
160 171anti-parallel
Strand 5
C
221 232anti-parallel
Strand 6
C
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
280 281first strand
Strand 2
C
284 285anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 137first strand
Strand 2
D
178 187parallel
Strand 3
D
190 199anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 137first strand
Strand 2
D
178 187parallel
Strand 3
D
153 157parallel
Strand 4
D
160 171anti-parallel
Strand 5
D
221 232anti-parallel
Strand 6
D
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
280 281first strand
Strand 2
D
284 285anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il