Analysis of interatomic Contacts of Structural Units in PDB entry:
3IJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IJ3 entry

There is 1 chain in PDB entry 3IJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 3IJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 22Right-handed 310
Helix 2
2
A
23 29Right-handed alpha
Helix 3
3
A
32 43Right-handed alpha
Helix 4
4
A
74 78Right-handed 310
Helix 5
5
A
79 84Right-handed alpha
Helix 6
6
A
92 96Right-handed 310
Helix 7
7
A
98 112Right-handed alpha
Helix 8
8
A
132 155Right-handed alpha
Helix 9
9
A
156 160Right-handed 310
Helix 10
10
A
161 176Right-handed alpha
Helix 11
11
A
185 192Right-handed alpha
Helix 12
12
A
192 200Right-handed alpha
Helix 13
13
A
239 244Right-handed alpha
Helix 14
14
A
245 249Right-handed 310
Helix 15
15
A
250 266Right-handed alpha
Helix 16
16
A
310 324Right-handed alpha
Helix 17
17
A
338 342Right-handed 310
Helix 18
18
A
355 370Right-handed alpha
Helix 19
19
A
379 387Right-handed 310
Helix 20
20
A
402 413Right-handed alpha
Helix 21
21
A
445 458Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3IJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
127 130parallel
Strand 3
A
87 90parallel
Strand 4
A
14 19parallel
Strand 5
A
61 67parallel
Strand 6
A
51 55anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 184first strand
Strand 2
A
207 213anti-parallel
Strand 3
A
271 281anti-parallel
Strand 4
A
227 231parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 184first strand
Strand 2
A
207 213anti-parallel
Strand 3
A
271 281anti-parallel
Strand 4
A
220 225parallel
Strand 5
A
329 335parallel
Strand 6
A
421 426parallel
Strand 7
A
350 353anti-parallel
Strand 8
A
374 375parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
301 303anti-parallel
Strand 3
A
393 394parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
440 441anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il