Analysis of interatomic Contacts of Structural Units in PDB entry:
3IJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IJ4 entry

There is 1 chain in PDB entry 3IJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 46GLU 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3IJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 71Right-handed alpha
Helix 2
2
A
101 103Right-handed alpha
Helix 3
3
A
106 116Right-handed alpha
Helix 4
4
A
134 143Right-handed alpha
Helix 5
5
A
155 162Right-handed alpha
Helix 6
6
A
166 169Right-handed alpha
Helix 7
7
A
227 229Right-handed 310
Helix 8
8
A
259 262Right-handed alpha
Helix 9
9
A
306 322Right-handed alpha
Helix 10
10
A
338 355Right-handed alpha
Helix 11
11
A
386 393Right-handed alpha
Helix 12
12
A
397 403Right-handed alpha
Helix 13
13
A
427 441Right-handed alpha
Helix 14
14
A
446 450Right-handed alpha
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There are 3 sheets in PDB entry 3IJ4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 81first strand
Strand 2
A
404 411anti-parallel
Strand 3
A
219 224anti-parallel
Strand 4
A
171 175anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 81first strand
Strand 2
A
416 423anti-parallel
Strand 3
A
270 282parallel
Strand 4
A
367 379anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
246 251anti-parallel
Strand 5
A
264 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il