Analysis of interatomic Contacts of Structural Units in PDB entry:
3IJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IJ5 entry

There are 4 chains in PDB entry 3IJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ILE 187
B
 ASN 3ILE 187
C
 THR 4ALA 182
D
 SER 2GLY 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3IJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 23Right-handed alpha
Helix 2
2
A
55 67Right-handed alpha
Helix 3
3
A
79 90Right-handed alpha
Helix 4
4
A
100 113Right-handed alpha
Helix 5
5
A
115 117Right-handed 310
Helix 6
6
A
125 127Right-handed 310
Helix 7
7
A
128 133Right-handed alpha
Helix 8
8
A
148 152Right-handed 310
Helix 9
9
A
163 176Right-handed alpha
Helix 10
10
B
16 24Right-handed alpha
Helix 11
11
B
55 66Right-handed alpha
Helix 12
12
B
79 89Right-handed alpha
Helix 13
13
B
100 113Right-handed alpha
Helix 14
14
B
115 117Right-handed 310
Helix 15
15
B
125 127Right-handed 310
Helix 16
16
B
128 133Right-handed alpha
Helix 17
17
B
148 152Right-handed 310
Helix 18
18
B
163 176Right-handed alpha
Helix 19
19
C
16 24Right-handed alpha
Helix 20
20
C
55 67Right-handed alpha
Helix 21
21
C
79 90Right-handed alpha
Helix 22
22
C
100 112Right-handed alpha
Helix 23
23
C
115 117Right-handed 310
Helix 24
24
C
125 127Right-handed 310
Helix 25
25
C
128 133Right-handed alpha
Helix 26
26
C
148 152Right-handed 310
Helix 27
27
C
163 176Right-handed alpha
Helix 28
28
D
16 24Right-handed alpha
Helix 29
29
D
55 67Right-handed alpha
Helix 30
30
D
79 89Right-handed alpha
Helix 31
31
D
100 113Right-handed alpha
Helix 32
32
D
115 117Right-handed 310
Helix 33
33
D
125 127Right-handed 310
Helix 34
34
D
128 133Right-handed alpha
Helix 35
35
D
148 152Right-handed 310
Helix 36
36
D
163 176Right-handed alpha
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There are 9 sheets in PDB entry 3IJ5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
14 15anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
70 74parallel
Strand 3
A
27 30parallel
Strand 4
A
119 123parallel
Strand 5
A
137 140parallel
Strand 6
A
154 155parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
49 54anti-parallel
Strand 3
D
40 44anti-parallel
Strand 4
D
49 54anti-parallel
Strand 5
C
40 44anti-parallel
Strand 6
C
49 54anti-parallel
Strand 7
B
40 44anti-parallel
Strand 8
B
49 54anti-parallel
Strand 9
A
40 44anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
12 15anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
70 74parallel
Strand 3
B
27 30parallel
Strand 4
B
119 123parallel
Strand 5
B
137 140parallel
Strand 6
B
154 155parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
14 15anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 95first strand
Strand 2
C
70 74parallel
Strand 3
C
27 30parallel
Strand 4
C
119 123parallel
Strand 5
C
137 140parallel
Strand 6
C
154 155parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
14 15anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 95first strand
Strand 2
D
70 74parallel
Strand 3
D
27 30parallel
Strand 4
D
119 123parallel
Strand 5
D
137 140parallel
Strand 6
D
154 155parallel
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