Analysis of interatomic Contacts of Structural Units in PDB entry:
3IJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IJ6 entry

There are 4 chains in PDB entry 3IJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2GLU 304
B
 LEU 2GLU 304
C
 LEU 2LYS 303
D
 LEU 2LYS 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 3IJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
26 31Right-handed alpha
Helix 3
3
A
32 35Right-handed 310
Helix 4
4
A
36 41Right-handed alpha
Helix 5
5
A
41 48Right-handed alpha
Helix 6
6
A
64 68Right-handed 310
Helix 7
7
A
70 92Right-handed alpha
Helix 8
8
A
107 121Right-handed alpha
Helix 9
9
A
143 153Right-handed alpha
Helix 10
10
A
174 190Right-handed alpha
Helix 11
11
A
191 196Right-handed alpha
Helix 12
12
A
205 208Right-handed 310
Helix 13
13
A
213 221Right-handed alpha
Helix 14
14
A
222 229Right-handed alpha
Helix 15
15
A
230 232Right-handed 310
Helix 16
16
A
241 253Right-handed alpha
Helix 17
17
A
272 282Right-handed alpha
Helix 18
18
A
286 295Right-handed alpha
Helix 19
19
A
295 303Right-handed alpha
Helix 20
20
B
13 24Right-handed alpha
Helix 21
21
B
26 31Right-handed alpha
Helix 22
22
B
32 35Right-handed 310
Helix 23
23
B
36 41Right-handed alpha
Helix 24
24
B
41 48Right-handed alpha
Helix 25
25
B
64 68Right-handed 310
Helix 26
26
B
70 92Right-handed alpha
Helix 27
27
B
107 118Right-handed alpha
Helix 28
28
B
140 142Right-handed 310
Helix 29
29
B
143 153Right-handed alpha
Helix 30
30
B
174 190Right-handed alpha
Helix 31
31
B
191 196Right-handed alpha
Helix 32
32
B
205 208Right-handed 310
Helix 33
33
B
213 221Right-handed alpha
Helix 34
34
B
222 229Right-handed alpha
Helix 35
35
B
230 232Right-handed 310
Helix 36
36
B
241 253Right-handed alpha
Helix 37
37
B
272 282Right-handed alpha
Helix 38
38
B
286 295Right-handed alpha
Helix 39
39
B
295 303Right-handed alpha
Helix 40
40
C
13 24Right-handed alpha
Helix 41
41
C
26 31Right-handed alpha
Helix 42
42
C
32 35Right-handed 310
Helix 43
43
C
36 41Right-handed alpha
Helix 44
44
C
41 48Right-handed alpha
Helix 45
45
C
70 92Right-handed alpha
Helix 46
46
C
107 117Right-handed alpha
Helix 47
47
C
143 153Right-handed alpha
Helix 48
48
C
174 190Right-handed alpha
Helix 49
49
C
191 196Right-handed alpha
Helix 50
50
C
213 221Right-handed alpha
Helix 51
51
C
222 229Right-handed alpha
Helix 52
52
C
230 232Right-handed 310
Helix 53
53
C
241 253Right-handed alpha
Helix 54
54
C
272 282Right-handed alpha
Helix 55
55
C
286 295Right-handed alpha
Helix 56
56
C
295 303Right-handed alpha
Helix 57
57
D
13 22Right-handed alpha
Helix 58
58
D
26 31Right-handed alpha
Helix 59
59
D
32 35Right-handed 310
Helix 60
60
D
36 41Right-handed alpha
Helix 61
61
D
41 48Right-handed alpha
Helix 62
62
D
64 68Right-handed 310
Helix 63
63
D
70 92Right-handed alpha
Helix 64
64
D
107 121Right-handed alpha
Helix 65
65
D
143 153Right-handed alpha
Helix 66
66
D
174 190Right-handed alpha
Helix 67
67
D
191 196Right-handed alpha
Helix 68
68
D
213 221Right-handed alpha
Helix 69
69
D
222 229Right-handed alpha
Helix 70
70
D
230 232Right-handed 310
Helix 71
71
D
241 253Right-handed alpha
Helix 72
72
D
272 282Right-handed alpha
Helix 73
73
D
286 295Right-handed alpha
Helix 74
74
D
295 302Right-handed alpha
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There are 8 sheets in PDB entry 3IJ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
54 60parallel
Strand 3
A
96 102parallel
Strand 4
A
124 130parallel
Strand 5
A
157 160parallel
Strand 6
A
201 203parallel
Strand 7
A
233 235parallel
Strand 8
A
257 258parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
136 137anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
54 60parallel
Strand 3
B
96 102parallel
Strand 4
B
124 130parallel
Strand 5
B
157 160parallel
Strand 6
B
201 203parallel
Strand 7
B
233 235parallel
Strand 8
B
257 258parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
136 137anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 11first strand
Strand 2
C
54 60parallel
Strand 3
C
96 102parallel
Strand 4
C
124 130parallel
Strand 5
C
157 160parallel
Strand 6
C
201 203parallel
Strand 7
C
233 235parallel
Strand 8
C
257 258parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 133first strand
Strand 2
C
136 137anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 11first strand
Strand 2
D
54 60parallel
Strand 3
D
96 102parallel
Strand 4
D
124 130parallel
Strand 5
D
157 160parallel
Strand 6
D
201 203parallel
Strand 7
D
233 235parallel
Strand 8
D
257 258parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 133first strand
Strand 2
D
136 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il