Analysis of interatomic Contacts of Structural Units in PDB entry:
3IJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IJD entry

There are 2 chains in PDB entry 3IJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1MET 303
B
 SER 0MET 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3IJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 8Right-handed alpha
Helix 2
2
A
26 43Right-handed alpha
Helix 3
3
A
74 83Right-handed alpha
Helix 4
4
A
97 99Right-handed 310
Helix 5
5
A
100 109Right-handed alpha
Helix 6
6
A
133 145Right-handed alpha
Helix 7
7
A
155 157Right-handed 310
Helix 8
8
A
158 163Right-handed alpha
Helix 9
9
A
164 175Right-handed alpha
Helix 10
10
A
187 205Right-handed alpha
Helix 11
11
A
221 232Right-handed alpha
Helix 12
12
A
236 245Right-handed alpha
Helix 13
13
A
249 272Right-handed alpha
Helix 14
14
A
285 303Right-handed alpha
Helix 15
15
B
1 8Right-handed alpha
Helix 16
16
B
26 43Right-handed alpha
Helix 17
17
B
74 83Right-handed alpha
Helix 18
18
B
97 99Right-handed 310
Helix 19
19
B
100 109Right-handed alpha
Helix 20
20
B
133 145Right-handed alpha
Helix 21
21
B
155 163Right-handed alpha
Helix 22
22
B
164 175Right-handed alpha
Helix 23
23
B
187 205Right-handed alpha
Helix 24
24
B
221 232Right-handed alpha
Helix 25
25
B
236 245Right-handed alpha
Helix 26
26
B
249 272Right-handed alpha
Helix 27
27
B
285 303Right-handed alpha
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There are 2 sheets in PDB entry 3IJD. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
48 51parallel
Strand 3
A
90 95parallel
Strand 4
A
117 121parallel
Strand 5
A
149 154parallel
Strand 6
A
179 182parallel
Strand 7
A
212 216parallel
Strand 8
A
275 281parallel
Strand 9
A
14 18parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
48 51parallel
Strand 3
B
90 95parallel
Strand 4
B
117 121parallel
Strand 5
B
149 154parallel
Strand 6
B
177 182parallel
Strand 7
B
212 216parallel
Strand 8
B
275 280parallel
Strand 9
B
14 18parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il