Analysis of interatomic Contacts of Structural Units in PDB entry:
3IJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IJI entry

There are 2 chains in PDB entry 3IJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 47LYS 382
B
 LYS 47LYS 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3IJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
92 96Right-handed 310
Helix 2
2
A
98 107Right-handed alpha
Helix 3
3
A
119 130Right-handed alpha
Helix 4
4
A
134 154Right-handed alpha
Helix 5
5
A
156 161Right-handed alpha
Helix 6
6
A
164 168Right-handed 310
Helix 7
7
A
179 191Right-handed alpha
Helix 8
8
A
205 215Right-handed alpha
Helix 9
9
A
231 245Right-handed alpha
Helix 10
10
A
255 257Right-handed 310
Helix 11
11
A
258 268Right-handed alpha
Helix 12
12
A
281 289Right-handed 310
Helix 13
13
A
298 303Right-handed alpha
Helix 14
14
A
304 318Right-handed alpha
Helix 15
15
A
330 339Right-handed alpha
Helix 16
16
A
340 344Right-handed 310
Helix 17
17
A
350 355Right-handed 310
Helix 18
18
B
92 96Right-handed 310
Helix 19
19
B
98 107Right-handed alpha
Helix 20
20
B
119 130Right-handed alpha
Helix 21
21
B
134 154Right-handed alpha
Helix 22
22
B
156 161Right-handed alpha
Helix 23
23
B
164 168Right-handed 310
Helix 24
24
B
179 191Right-handed alpha
Helix 25
25
B
205 215Right-handed alpha
Helix 26
26
B
231 245Right-handed alpha
Helix 27
27
B
258 267Right-handed alpha
Helix 28
28
B
281 289Right-handed 310
Helix 29
29
B
298 303Right-handed alpha
Helix 30
30
B
304 318Right-handed alpha
Helix 31
31
B
330 339Right-handed alpha
Helix 32
32
B
340 344Right-handed 310
Helix 33
33
B
350 355Right-handed 310
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There are 8 sheets in PDB entry 3IJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
73 80anti-parallel
Strand 3
A
83 90anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 63first strand
Strand 2
A
66 71anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
221 224parallel
Strand 3
A
247 251parallel
Strand 4
A
273 275parallel
Strand 5
A
294 297parallel
Strand 6
A
321 324parallel
Strand 7
A
346 347parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
369 371anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
73 80anti-parallel
Strand 3
B
83 90anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 63first strand
Strand 2
B
66 71anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
197 200parallel
Strand 3
B
221 224parallel
Strand 4
B
247 251parallel
Strand 5
B
273 275parallel
Strand 6
B
294 297parallel
Strand 7
B
321 324parallel
Strand 8
B
346 347parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
369 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il