Analysis of interatomic Contacts of Structural Units in PDB entry:
3IJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IJR entry

There are 8 chains in PDB entry 3IJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8GLY 288
B
 ASN 6GLY 288
C
 VAL 8GLY 288
D
 VAL 8GLY 288
E
 THR 9GLY 288
F
 ASN -1GLY 288
G
 VAL 8GLY 288
H
 ALA 0GLY 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are120 helices in PDB entry 3IJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
54 67Right-handed alpha
Helix 3
3
A
78 91Right-handed alpha
Helix 4
4
A
105 121Right-handed alpha
Helix 5
5
A
138 142Right-handed 310
Helix 6
6
A
143 155Right-handed alpha
Helix 7
7
A
155 167Right-handed alpha
Helix 8
8
A
181 186Right-handed alpha
Helix 9
9
A
190 212Right-handed alpha
Helix 10
10
A
213 215Right-handed 310
Helix 11
11
A
229 235Right-handed alpha
Helix 12
12
A
236 243Right-handed alpha
Helix 13
13
A
254 257Right-handed 310
Helix 14
14
A
258 267Right-handed alpha
Helix 15
15
A
268 271Right-handed 310
Helix 16
16
B
21 25Right-handed 310
Helix 17
17
B
54 67Right-handed alpha
Helix 18
18
B
78 92Right-handed alpha
Helix 19
19
B
105 121Right-handed alpha
Helix 20
20
B
138 142Right-handed 310
Helix 21
21
B
143 155Right-handed alpha
Helix 22
22
B
155 166Right-handed alpha
Helix 23
23
B
167 169Right-handed 310
Helix 24
24
B
181 186Right-handed alpha
Helix 25
25
B
190 212Right-handed alpha
Helix 26
26
B
213 215Right-handed 310
Helix 27
27
B
236 243Right-handed alpha
Helix 28
28
B
254 257Right-handed 310
Helix 29
29
B
258 267Right-handed alpha
Helix 30
30
B
268 271Right-handed 310
Helix 31
31
C
21 25Right-handed 310
Helix 32
32
C
54 67Right-handed alpha
Helix 33
33
C
78 92Right-handed alpha
Helix 34
34
C
105 121Right-handed alpha
Helix 35
35
C
138 142Right-handed 310
Helix 36
36
C
143 155Right-handed alpha
Helix 37
37
C
155 166Right-handed alpha
Helix 38
38
C
181 186Right-handed alpha
Helix 39
39
C
190 212Right-handed alpha
Helix 40
40
C
213 215Right-handed 310
Helix 41
41
C
229 235Right-handed alpha
Helix 42
42
C
236 243Right-handed alpha
Helix 43
43
C
254 257Right-handed 310
Helix 44
44
C
258 267Right-handed alpha
Helix 45
45
C
268 271Right-handed 310
Helix 46
46
D
21 25Right-handed 310
Helix 47
47
D
54 67Right-handed alpha
Helix 48
48
D
78 91Right-handed alpha
Helix 49
49
D
105 121Right-handed alpha
Helix 50
50
D
138 142Right-handed 310
Helix 51
51
D
143 155Right-handed alpha
Helix 52
52
D
155 166Right-handed alpha
Helix 53
53
D
167 169Right-handed 310
Helix 54
54
D
181 186Right-handed alpha
Helix 55
55
D
190 212Right-handed alpha
Helix 56
56
D
213 215Right-handed 310
Helix 57
57
D
229 235Right-handed alpha
Helix 58
58
D
236 242Right-handed alpha
Helix 59
59
D
254 257Right-handed 310
Helix 60
60
D
258 267Right-handed alpha
Helix 61
61
D
268 271Right-handed 310
Helix 62
62
E
21 25Right-handed 310
Helix 63
63
E
54 67Right-handed alpha
Helix 64
64
E
78 92Right-handed alpha
Helix 65
65
E
105 121Right-handed alpha
Helix 66
66
E
138 142Right-handed 310
Helix 67
67
E
143 155Right-handed alpha
Helix 68
68
E
155 166Right-handed alpha
Helix 69
69
E
181 186Right-handed alpha
Helix 70
70
E
190 212Right-handed alpha
Helix 71
71
E
213 215Right-handed 310
Helix 72
72
E
236 242Right-handed alpha
Helix 73
73
E
254 257Right-handed 310
Helix 74
74
E
258 267Right-handed alpha
Helix 75
75
E
268 271Right-handed 310
Helix 76
76
F
21 25Right-handed 310
Helix 77
77
F
54 67Right-handed alpha
Helix 78
78
F
78 91Right-handed alpha
Helix 79
79
F
105 121Right-handed alpha
Helix 80
80
F
138 142Right-handed 310
Helix 81
81
F
143 155Right-handed alpha
Helix 82
82
F
155 166Right-handed alpha
Helix 83
83
F
167 169Right-handed 310
Helix 84
84
F
181 186Right-handed alpha
Helix 85
85
F
190 212Right-handed alpha
Helix 86
86
F
213 215Right-handed 310
Helix 87
87
F
236 241Right-handed alpha
Helix 88
88
F
254 257Right-handed 310
Helix 89
89
F
258 267Right-handed alpha
Helix 90
90
F
268 271Right-handed 310
Helix 91
91
G
21 25Right-handed 310
Helix 92
92
G
54 67Right-handed alpha
Helix 93
93
G
78 92Right-handed alpha
Helix 94
94
G
105 121Right-handed alpha
Helix 95
95
G
138 142Right-handed 310
Helix 96
96
G
143 155Right-handed alpha
Helix 97
97
G
155 166Right-handed alpha
Helix 98
98
G
181 186Right-handed alpha
Helix 99
99
G
190 212Right-handed alpha
Helix 100
100
G
213 215Right-handed 310
Helix 101
101
G
236 241Right-handed alpha
Helix 102
102
G
254 257Right-handed 310
Helix 103
103
G
258 267Right-handed alpha
Helix 104
104
G
268 271Right-handed 310
Helix 105
105
H
3 7Right-handed 310
Helix 106
106
H
21 25Right-handed 310
Helix 107
107
H
54 67Right-handed alpha
Helix 108
108
H
78 91Right-handed alpha
Helix 109
109
H
105 121Right-handed alpha
Helix 110
110
H
138 142Right-handed 310
Helix 111
111
H
143 155Right-handed alpha
Helix 112
112
H
155 166Right-handed alpha
Helix 113
113
H
180 186Right-handed alpha
Helix 114
114
H
190 212Right-handed alpha
Helix 115
115
H
213 215Right-handed 310
Helix 116
116
H
229 235Right-handed alpha
Helix 117
117
H
236 243Right-handed alpha
Helix 118
118
H
254 257Right-handed 310
Helix 119
119
H
258 267Right-handed alpha
Helix 120
120
H
268 271Right-handed 310
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There are 8 sheets in PDB entry 3IJR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
70 75parallel
Strand 3
A
46 50parallel
Strand 4
A
125 128parallel
Strand 5
A
174 178parallel
Strand 6
A
217 223parallel
Strand 7
A
277 280parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
70 75parallel
Strand 3
B
46 50parallel
Strand 4
B
125 128parallel
Strand 5
B
174 178parallel
Strand 6
B
217 223parallel
Strand 7
B
277 280parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 100first strand
Strand 2
C
70 75parallel
Strand 3
C
46 50parallel
Strand 4
C
125 128parallel
Strand 5
C
174 178parallel
Strand 6
C
217 223parallel
Strand 7
C
277 280parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 100first strand
Strand 2
D
70 75parallel
Strand 3
D
46 50parallel
Strand 4
D
125 128parallel
Strand 5
D
174 178parallel
Strand 6
D
217 223parallel
Strand 7
D
277 280parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
96 100first strand
Strand 2
E
70 75parallel
Strand 3
E
46 50parallel
Strand 4
E
125 128parallel
Strand 5
E
174 178parallel
Strand 6
E
217 223parallel
Strand 7
E
277 280parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
96 100first strand
Strand 2
F
70 75parallel
Strand 3
F
46 50parallel
Strand 4
F
125 128parallel
Strand 5
F
174 178parallel
Strand 6
F
217 223parallel
Strand 7
F
277 280parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
96 100first strand
Strand 2
G
70 75parallel
Strand 3
G
46 50parallel
Strand 4
G
125 128parallel
Strand 5
G
174 178parallel
Strand 6
G
217 223parallel
Strand 7
G
277 280parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
96 100first strand
Strand 2
H
70 75parallel
Strand 3
H
46 50parallel
Strand 4
H
125 128parallel
Strand 5
H
174 178parallel
Strand 6
H
217 223parallel
Strand 7
H
277 280parallel
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