Analysis of interatomic Contacts of Structural Units in PDB entry:
3IM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IM9 entry

There is 1 chain in PDB entry 3IM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -7ASN 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3IM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 40Right-handed alpha
Helix 2
2
A
43 50Right-handed alpha
Helix 3
3
A
58 77Right-handed alpha
Helix 4
4
A
90 99Right-handed alpha
Helix 5
5
A
103 121Right-handed alpha
Helix 6
6
A
136 148Right-handed alpha
Helix 7
7
A
171 181Right-handed alpha
Helix 8
8
A
200 205Right-handed 310
Helix 9
9
A
206 215Right-handed alpha
Helix 10
10
A
237 249Right-handed alpha
Helix 11
11
A
255 265Right-handed alpha
Helix 12
12
A
277 287Right-handed alpha
Helix 13
13
A
297 305Right-handed alpha
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There are 3 sheets in PDB entry 3IM9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
3 8parallel
Strand 3
A
267 273parallel
Strand 4
A
291 295parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
127 133anti-parallel
Strand 3
A
164 170anti-parallel
Strand 4
A
154 161anti-parallel
Strand 5
A
253 254parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
234 235anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il