Analysis of interatomic Contacts of Structural Units in PDB entry:
3INM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3INM entry

There are 3 chains in PDB entry 3INM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ALA 410
B
 LYS 4LEU 414
C
 LYS 4ALA 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3INM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
45 52Right-handed alpha
Helix 3
3
A
54 68Right-handed alpha
Helix 4
4
A
79 87Right-handed alpha
Helix 5
5
A
94 104Right-handed alpha
Helix 6
6
A
136 141Right-handed 310
Helix 7
7
A
186 204Right-handed alpha
Helix 8
8
A
218 235Right-handed alpha
Helix 9
9
A
235 242Right-handed alpha
Helix 10
10
A
251 261Right-handed alpha
Helix 11
11
A
270 286Right-handed alpha
Helix 12
12
A
312 321Right-handed alpha
Helix 13
13
A
329 348Right-handed alpha
Helix 14
14
A
349 370Right-handed alpha
Helix 15
15
A
373 382Right-handed alpha
Helix 16
16
A
383 386Right-handed 310
Helix 17
17
A
387 391Right-handed 310
Helix 18
18
A
393 410Right-handed alpha
Helix 19
19
B
16 30Right-handed alpha
Helix 20
20
B
45 52Right-handed alpha
Helix 21
21
B
54 68Right-handed alpha
Helix 22
22
B
79 87Right-handed alpha
Helix 23
23
B
94 104Right-handed alpha
Helix 24
24
B
136 141Right-handed 310
Helix 25
25
B
186 204Right-handed alpha
Helix 26
26
B
218 235Right-handed alpha
Helix 27
27
B
235 242Right-handed alpha
Helix 28
28
B
251 261Right-handed alpha
Helix 29
29
B
270 286Right-handed alpha
Helix 30
30
B
312 321Right-handed alpha
Helix 31
31
B
329 348Right-handed alpha
Helix 32
32
B
349 369Right-handed alpha
Helix 33
33
B
373 382Right-handed alpha
Helix 34
34
B
383 386Right-handed 310
Helix 35
35
B
387 391Right-handed 310
Helix 36
36
B
393 414Right-handed alpha
Helix 37
37
C
16 30Right-handed alpha
Helix 38
38
C
45 52Right-handed alpha
Helix 39
39
C
54 68Right-handed alpha
Helix 40
40
C
79 86Right-handed alpha
Helix 41
41
C
94 104Right-handed alpha
Helix 42
42
C
136 141Right-handed 310
Helix 43
43
C
185 204Right-handed alpha
Helix 44
44
C
218 235Right-handed alpha
Helix 45
45
C
235 242Right-handed alpha
Helix 46
46
C
251 260Right-handed alpha
Helix 47
47
C
270 286Right-handed alpha
Helix 48
48
C
312 321Right-handed alpha
Helix 49
49
C
329 348Right-handed alpha
Helix 50
50
C
349 369Right-handed alpha
Helix 51
51
C
373 382Right-handed alpha
Helix 52
52
C
383 386Right-handed 310
Helix 53
53
C
387 391Right-handed 310
Helix 54
54
C
393 409Right-handed alpha
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There are 7 sheets in PDB entry 3INM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 43first strand
Strand 2
A
5 14parallel
Strand 3
A
69 72parallel
Strand 4
A
303 307parallel
Strand 5
A
291 296anti-parallel
Strand 6
A
106 111anti-parallel
Strand 7
A
128 133anti-parallel
Strand 8
A
265 269parallel
Strand 9
A
207 211parallel
Strand 10
A
246 250parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
177 185anti-parallel
Strand 3
B
177 185anti-parallel
Strand 4
B
142 146anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 172first strand
Strand 2
A
150 158anti-parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
165 172anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 43first strand
Strand 2
B
5 14parallel
Strand 3
B
69 72parallel
Strand 4
B
303 306parallel
Strand 5
B
291 296anti-parallel
Strand 6
B
106 111anti-parallel
Strand 7
B
128 133anti-parallel
Strand 8
B
265 269parallel
Strand 9
B
207 211parallel
Strand 10
B
246 250parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 43first strand
Strand 2
C
5 14parallel
Strand 3
C
69 72parallel
Strand 4
C
303 306parallel
Strand 5
C
291 296anti-parallel
Strand 6
C
106 111anti-parallel
Strand 7
C
128 133anti-parallel
Strand 8
C
265 269parallel
Strand 9
C
207 211parallel
Strand 10
C
246 250parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 146first strand
Strand 2
C
177 181anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 156first strand
Strand 2
C
165 172anti-parallel
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