Analysis of interatomic Contacts of Structural Units in PDB entry:
3INO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3INO entry

There are 2 chains in PDB entry 3INO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 593GLY 735
B
 GLY 593GLY 735
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3INO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
608 616Right-handed alpha
Helix 2
2
A
632 637Right-handed alpha
Helix 3
3
A
704 706Right-handed 310
Helix 4
4
A
732 734Right-handed 310
Helix 5
5
B
608 616Right-handed alpha
Helix 6
6
B
632 637Right-handed alpha
Helix 7
7
B
704 706Right-handed 310
Helix 8
8
B
732 734Right-handed 310
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There are 6 sheets in PDB entry 3INO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
604 606anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 623first strand
Strand 2
A
626 629anti-parallel
Strand 3
A
674 677anti-parallel
Strand 4
A
666 668anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 655first strand
Strand 2
A
639 647anti-parallel
Strand 3
A
695 702anti-parallel
Strand 4
A
724 730anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
596 598first strand
Strand 2
B
604 607anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
619 623first strand
Strand 2
B
626 629anti-parallel
Strand 3
B
674 677anti-parallel
Strand 4
B
666 668anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
653 655first strand
Strand 2
B
639 647anti-parallel
Strand 3
B
695 702anti-parallel
Strand 4
B
724 730anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il