Analysis of interatomic Contacts of Structural Units in PDB entry:
3IPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IPD entry

There are 8 chains in PDB entry 3IPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26THR 116
B
 LYS 189ILE 286
C
 ARG 8GLY 82
D
 SER 138THR 200
E
 GLY 26THR 116
F
 LYS 189ILE 286
G
 ARG 8GLY 82
H
 SER 138THR 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3IPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 69Right-handed alpha
Helix 2
2
A
71 98Right-handed alpha
Helix 3
3
A
101 112Right-handed alpha
Helix 4
4
B
194 218Right-handed alpha
Helix 5
5
B
218 277Right-handed alpha
Helix 6
6
C
20 78Right-handed alpha
Helix 7
7
D
142 147Right-handed alpha
Helix 8
8
D
148 187Right-handed alpha
Helix 9
9
D
188 197Right-handed alpha
Helix 10
10
E
30 69Right-handed alpha
Helix 11
11
E
71 98Right-handed alpha
Helix 12
12
E
101 112Right-handed alpha
Helix 13
13
F
194 218Right-handed alpha
Helix 14
14
F
218 279Right-handed alpha
Helix 15
15
G
20 78Right-handed alpha
Helix 16
16
H
142 147Right-handed alpha
Helix 17
17
H
148 187Right-handed alpha
Helix 18
18
H
188 197Right-handed alpha
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There are no sheets in PDB entry 3IPD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il