Analysis of interatomic Contacts of Structural Units in PDB entry:
3IPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IPW entry

There is 1 chain in PDB entry 3IPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0THR 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 3IPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
30 41Right-handed alpha
Helix 3
3
A
52 67Right-handed alpha
Helix 4
4
A
68 70Right-handed 310
Helix 5
5
A
81 90Right-handed 310
Helix 6
6
A
92 104Right-handed alpha
Helix 7
7
A
125 136Right-handed alpha
Helix 8
8
A
136 143Right-handed alpha
Helix 9
9
A
155 166Right-handed alpha
Helix 10
10
A
181 191Right-handed alpha
Helix 11
11
A
199 203Right-handed 310
Helix 12
12
A
204 212Right-handed alpha
Helix 13
13
A
213 214Right-handed 310
Helix 14
14
A
215 217Right-handed 310
Helix 15
15
A
234 240Right-handed 310
Helix 16
16
A
248 252Right-handed 310
Helix 17
17
A
263 265Right-handed 310
Helix 18
18
A
266 279Right-handed alpha
Helix 19
19
A
281 298Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3IPW. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
43 48parallel
Strand 3
A
73 78parallel
Strand 4
A
108 117parallel
Strand 5
A
148 153parallel
Strand 6
A
173 175parallel
Strand 7
A
194 197parallel
Strand 8
A
219 221parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
24 25anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il