Analysis of interatomic Contacts of Structural Units in PDB entry:
3IVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IVE entry

There is 1 chain in PDB entry 3IVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22LYS 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3IVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 49Right-handed 310
Helix 2
2
A
54 69Right-handed alpha
Helix 3
3
A
84 89Right-handed alpha
Helix 4
4
A
92 100Right-handed alpha
Helix 5
5
A
110 115Right-handed 310
Helix 6
6
A
117 126Right-handed alpha
Helix 7
7
A
168 176Right-handed alpha
Helix 8
8
A
177 181Right-handed 310
Helix 9
9
A
188 201Right-handed alpha
Helix 10
10
A
231 241Right-handed alpha
Helix 11
11
A
302 306Right-handed 310
Helix 12
12
A
309 328Right-handed alpha
Helix 13
13
A
346 361Right-handed alpha
Helix 14
14
A
372 374Right-handed 310
Helix 15
15
A
385 392Right-handed alpha
Helix 16
16
A
405 417Right-handed alpha
Helix 17
17
A
465 469Right-handed alpha
Helix 18
18
A
470 480Right-handed 310
Helix 19
19
A
491 501Right-handed alpha
Helix 20
20
A
506 512Right-handed alpha
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There are 6 sheets in PDB entry 3IVE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
72 76parallel
Strand 3
A
23 30parallel
Strand 4
A
276 284anti-parallel
Strand 5
A
291 300anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
184 186anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
159 167anti-parallel
Strand 3
A
206 212parallel
Strand 4
A
246 250parallel
Strand 5
A
265 268parallel
Strand 6
A
260 262anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 334first strand
Strand 2
A
381 384anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
366 370anti-parallel
Strand 3
A
458 464parallel
Strand 4
A
397 404anti-parallel
Strand 5
A
481 490anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
443 448anti-parallel
Strand 3
A
429 433anti-parallel
Strand 4
A
515 517parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il