Analysis of interatomic Contacts of Structural Units in PDB entry:
3IVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IVU entry

There are 2 chains in PDB entry 3IVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ALA 404
B
 GLU 5ALA 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3IVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 30Right-handed 310
Helix 2
2
A
43 48Right-handed 310
Helix 3
3
A
54 69Right-handed alpha
Helix 4
4
A
81 93Right-handed alpha
Helix 5
5
A
107 118Right-handed alpha
Helix 6
6
A
127 129Right-handed 310
Helix 7
7
A
145 158Right-handed alpha
Helix 8
8
A
173 188Right-handed alpha
Helix 9
9
A
202 217Right-handed alpha
Helix 10
10
A
231 242Right-handed alpha
Helix 11
11
A
250 254Right-handed 310
Helix 12
12
A
262 274Right-handed alpha
Helix 13
13
A
274 282Right-handed alpha
Helix 14
14
A
283 285Right-handed 310
Helix 15
15
A
286 299Right-handed alpha
Helix 16
16
A
336 341Right-handed 310
Helix 17
17
A
354 365Right-handed alpha
Helix 18
18
A
370 386Right-handed alpha
Helix 19
19
A
391 399Right-handed alpha
Helix 20
20
B
24 30Right-handed 310
Helix 21
21
B
43 48Right-handed 310
Helix 22
22
B
54 69Right-handed alpha
Helix 23
23
B
77 80Right-handed 310
Helix 24
24
B
81 93Right-handed alpha
Helix 25
25
B
107 117Right-handed alpha
Helix 26
26
B
127 129Right-handed 310
Helix 27
27
B
145 158Right-handed alpha
Helix 28
28
B
168 172Right-handed 310
Helix 29
29
B
173 188Right-handed alpha
Helix 30
30
B
202 217Right-handed alpha
Helix 31
31
B
231 243Right-handed alpha
Helix 32
32
B
250 254Right-handed 310
Helix 33
33
B
262 274Right-handed alpha
Helix 34
34
B
274 282Right-handed alpha
Helix 35
35
B
283 285Right-handed 310
Helix 36
36
B
286 299Right-handed alpha
Helix 37
37
B
336 341Right-handed 310
Helix 38
38
B
353 365Right-handed alpha
Helix 39
39
B
370 386Right-handed alpha
Helix 40
40
B
392 399Right-handed alpha
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There are 6 sheets in PDB entry 3IVU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
B
141 144anti-parallel
Strand 3
B
131 134anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
72 75parallel
Strand 3
A
99 105parallel
Strand 4
A
121 125parallel
Strand 5
A
161 165parallel
Strand 6
A
191 196parallel
Strand 7
A
220 225parallel
Strand 8
A
246 249parallel
Strand 9
A
36 39parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
141 144anti-parallel
Strand 3
B
8 10anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
346 348parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
72 75parallel
Strand 3
B
99 105parallel
Strand 4
B
121 125parallel
Strand 5
B
161 165parallel
Strand 6
B
191 196parallel
Strand 7
B
220 225parallel
Strand 8
B
246 249parallel
Strand 9
B
36 39parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 317first strand
Strand 2
B
346 348parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il