Analysis of interatomic Contacts of Structural Units in PDB entry:
3J04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J04 entry

There are 6 chains in PDB entry 3J04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 910
B
 PHE 25LYS 167
C
 PHE 3GLY 150
D
 SER 2ALA 910
E
 PHE 25LYS 167
F
 PHE 3GLY 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 3J04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
22 29Right-handed alpha
Helix 3
3
A
80 84Right-handed 310
Helix 4
4
A
88 92Right-handed 310
Helix 5
5
A
96 110Right-handed alpha
Helix 6
6
A
134 142Right-handed alpha
Helix 7
7
A
152 165Right-handed alpha
Helix 8
8
A
182 198Right-handed alpha
Helix 9
9
A
218 234Right-handed alpha
Helix 10
10
A
273 277Right-handed 310
Helix 11
11
A
287 297Right-handed alpha
Helix 12
12
A
298 305Right-handed alpha
Helix 13
13
A
327 343Right-handed alpha
Helix 14
14
A
345 362Right-handed alpha
Helix 15
15
A
363 365Right-handed 310
Helix 16
16
A
381 390Right-handed alpha
Helix 17
17
A
394 404Right-handed alpha
Helix 18
18
A
419 451Right-handed alpha
Helix 19
19
A
476 499Right-handed alpha
Helix 20
20
A
499 509Right-handed alpha
Helix 21
21
A
521 530Right-handed alpha
Helix 22
22
A
536 545Right-handed alpha
Helix 23
23
A
551 563Right-handed alpha
Helix 24
24
A
597 603Right-handed alpha
Helix 25
25
A
606 615Right-handed alpha
Helix 26
26
A
618 625Right-handed alpha
Helix 27
27
A
651 655Right-handed 310
Helix 28
28
A
658 675Right-handed alpha
Helix 29
29
A
697 709Right-handed alpha
Helix 30
30
A
709 719Right-handed alpha
Helix 31
31
A
727 735Right-handed alpha
Helix 32
32
A
736 738Right-handed 310
Helix 33
33
A
748 760Right-handed alpha
Helix 34
34
A
786 797Right-handed alpha
Helix 35
35
A
802 813Right-handed alpha
Helix 36
36
A
823 838Right-handed alpha
Helix 37
37
A
838 851Right-handed alpha
Helix 38
38
A
853 910Right-handed alpha
Helix 39
39
B
26 38Right-handed alpha
Helix 40
40
B
49 60Right-handed alpha
Helix 41
41
B
65 71Right-handed alpha
Helix 42
42
B
81 92Right-handed alpha
Helix 43
43
B
98 107Right-handed alpha
Helix 44
44
B
121 128Right-handed alpha
Helix 45
45
B
134 145Right-handed alpha
Helix 46
46
B
156 164Right-handed alpha
Helix 47
47
C
4 17Right-handed alpha
Helix 48
48
C
30 38Right-handed alpha
Helix 49
49
C
43 51Right-handed alpha
Helix 50
50
C
55 60Right-handed alpha
Helix 51
51
C
65 78Right-handed alpha
Helix 52
52
C
85 94Right-handed alpha
Helix 53
53
C
105 115Right-handed alpha
Helix 54
54
C
120 129Right-handed alpha
Helix 55
55
C
140 149Right-handed alpha
Helix 56
56
D
9 13Right-handed 310
Helix 57
57
D
22 29Right-handed alpha
Helix 58
58
D
80 84Right-handed 310
Helix 59
59
D
88 92Right-handed 310
Helix 60
60
D
96 110Right-handed alpha
Helix 61
61
D
134 142Right-handed alpha
Helix 62
62
D
152 165Right-handed alpha
Helix 63
63
D
182 198Right-handed alpha
Helix 64
64
D
218 234Right-handed alpha
Helix 65
65
D
273 277Right-handed 310
Helix 66
66
D
287 297Right-handed alpha
Helix 67
67
D
298 305Right-handed alpha
Helix 68
68
D
327 343Right-handed alpha
Helix 69
69
D
345 362Right-handed alpha
Helix 70
70
D
363 365Right-handed 310
Helix 71
71
D
381 390Right-handed alpha
Helix 72
72
D
394 404Right-handed alpha
Helix 73
73
D
419 451Right-handed alpha
Helix 74
74
D
476 498Right-handed alpha
Helix 75
75
D
498 509Right-handed alpha
Helix 76
76
D
521 530Right-handed alpha
Helix 77
77
D
536 545Right-handed alpha
Helix 78
78
D
551 563Right-handed alpha
Helix 79
79
D
597 603Right-handed alpha
Helix 80
80
D
606 615Right-handed alpha
Helix 81
81
D
618 625Right-handed alpha
Helix 82
82
D
651 655Right-handed 310
Helix 83
83
D
658 675Right-handed alpha
Helix 84
84
D
697 709Right-handed alpha
Helix 85
85
D
709 718Right-handed alpha
Helix 86
86
D
727 735Right-handed alpha
Helix 87
87
D
736 738Right-handed 310
Helix 88
88
D
748 760Right-handed alpha
Helix 89
89
D
779 787Right-handed alpha
Helix 90
90
D
794 796Right-handed 310
Helix 91
91
D
797 816Right-handed alpha
Helix 92
92
D
823 831Right-handed alpha
Helix 93
93
D
839 908Right-handed alpha
Helix 94
94
E
26 41Right-handed alpha
Helix 95
95
E
49 60Right-handed alpha
Helix 96
96
E
65 72Right-handed alpha
Helix 97
97
E
81 93Right-handed alpha
Helix 98
98
E
98 107Right-handed alpha
Helix 99
99
E
120 128Right-handed alpha
Helix 100
100
E
134 145Right-handed alpha
Helix 101
101
E
156 164Right-handed alpha
Helix 102
102
F
4 17Right-handed alpha
Helix 103
103
F
30 38Right-handed alpha
Helix 104
104
F
43 51Right-handed alpha
Helix 105
105
F
55 62Right-handed alpha
Helix 106
106
F
65 78Right-handed alpha
Helix 107
107
F
85 94Right-handed alpha
Helix 108
108
F
105 115Right-handed alpha
Helix 109
109
F
120 129Right-handed alpha
Helix 110
110
F
140 149Right-handed alpha
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There are 18 sheets in PDB entry 3J04. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
44 52anti-parallel
Strand 4
A
34 38anti-parallel
Strand 5
A
76 77anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
120 124anti-parallel
Strand 3
A
678 685parallel
Strand 4
A
171 176parallel
Strand 5
A
459 465parallel
Strand 6
A
250 256anti-parallel
Strand 7
A
262 269anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
245 246anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
376 377anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 407first strand
Strand 2
A
414 415anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 571first strand
Strand 2
A
580 585anti-parallel
Strand 3
A
588 593anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 726first strand
Strand 2
A
773 776anti-parallel
Strand 3
A
767 769anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 27first strand
Strand 2
C
63 64anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 104first strand
Strand 2
C
137 139anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 71first strand
Strand 2
D
56 61anti-parallel
Strand 3
D
43 52anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
76 77anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 116first strand
Strand 2
D
121 124anti-parallel
Strand 3
D
678 685parallel
Strand 4
D
171 176parallel
Strand 5
D
459 465parallel
Strand 6
D
250 256anti-parallel
Strand 7
D
262 269anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
236 237first strand
Strand 2
D
245 246anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
368 369first strand
Strand 2
D
376 377anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
406 407first strand
Strand 2
D
414 415anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
569 571first strand
Strand 2
D
580 585anti-parallel
Strand 3
D
588 593anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
723 726first strand
Strand 2
D
773 776anti-parallel
Strand 3
D
767 769anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
26 27first strand
Strand 2
F
63 64anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
102 104first strand
Strand 2
F
137 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il