Analysis of interatomic Contacts of Structural Units in PDB entry:
3J07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J07 entry

There are 24 chains in PDB entry 3J07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 175
B
 MET 1LYS 175
C
 MET 1LYS 175
D
 MET 1LYS 175
E
 MET 1LYS 175
F
 MET 1LYS 175
G
 MET 1LYS 175
H
 MET 1LYS 175
I
 MET 1LYS 175
J
 MET 1LYS 175
K
 MET 1LYS 175
L
 MET 1LYS 175
M
 MET 1LYS 175
N
 MET 1LYS 175
O
 MET 1LYS 175
P
 MET 1LYS 175
Q
 MET 1LYS 175
R
 MET 1LYS 175
S
 MET 1LYS 175
T
 MET 1LYS 175
U
 MET 1LYS 175
V
 MET 1LYS 175
W
 MET 1LYS 175
X
 MET 1LYS 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 81 helices in PDB entry 3J07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 11Right-handed alpha
Helix 2
2
A
14 18Right-handed 310
Helix 3
3
A
23 35Right-handed alpha
Helix 4
4
B
6 11Right-handed alpha
Helix 5
5
B
14 18Right-handed 310
Helix 6
6
B
25 37Right-handed alpha
Helix 7
7
C
5 10Right-handed alpha
Helix 8
8
C
14 18Right-handed 310
Helix 9
9
C
23 35Right-handed alpha
Helix 10
10
D
6 11Right-handed alpha
Helix 11
11
D
14 18Right-handed 310
Helix 12
12
D
26 32Right-handed alpha
Helix 13
13
D
32 37Right-handed alpha
Helix 14
14
E
5 11Right-handed alpha
Helix 15
15
E
14 18Right-handed 310
Helix 16
16
E
23 35Right-handed alpha
Helix 17
17
E
64 68Right-handed 310
Helix 18
18
F
6 11Right-handed alpha
Helix 19
19
F
14 18Right-handed 310
Helix 20
20
F
26 37Right-handed alpha
Helix 21
21
G
5 10Right-handed alpha
Helix 22
22
G
14 18Right-handed 310
Helix 23
23
G
23 35Right-handed alpha
Helix 24
24
H
5 11Right-handed alpha
Helix 25
25
H
14 18Right-handed 310
Helix 26
26
H
26 32Right-handed alpha
Helix 27
27
H
32 37Right-handed alpha
Helix 28
28
I
5 11Right-handed alpha
Helix 29
29
I
14 18Right-handed 310
Helix 30
30
I
23 35Right-handed alpha
Helix 31
31
J
5 11Right-handed alpha
Helix 32
32
J
14 18Right-handed 310
Helix 33
33
J
26 37Right-handed alpha
Helix 34
34
J
85 87Right-handed 310
Helix 35
35
K
5 11Right-handed alpha
Helix 36
36
K
14 18Right-handed 310
Helix 37
37
K
23 35Right-handed alpha
Helix 38
38
L
5 11Right-handed alpha
Helix 39
39
L
14 18Right-handed 310
Helix 40
40
L
26 37Right-handed alpha
Helix 41
41
M
5 10Right-handed alpha
Helix 42
42
M
14 18Right-handed 310
Helix 43
43
M
23 35Right-handed alpha
Helix 44
44
M
124 128Right-handed 310
Helix 45
45
N
5 11Right-handed alpha
Helix 46
46
N
14 18Right-handed 310
Helix 47
47
N
26 32Right-handed alpha
Helix 48
48
N
32 37Right-handed alpha
Helix 49
49
O
5 11Right-handed alpha
Helix 50
50
O
12 18Right-handed 310
Helix 51
51
O
23 35Right-handed alpha
Helix 52
52
O
124 128Right-handed 310
Helix 53
53
P
5 11Right-handed alpha
Helix 54
54
P
14 18Right-handed 310
Helix 55
55
P
26 37Right-handed alpha
Helix 56
56
Q
5 10Right-handed alpha
Helix 57
57
Q
14 18Right-handed 310
Helix 58
58
Q
23 35Right-handed alpha
Helix 59
59
Q
124 128Right-handed 310
Helix 60
60
R
6 11Right-handed alpha
Helix 61
61
R
14 18Right-handed 310
Helix 62
62
R
26 32Right-handed alpha
Helix 63
63
R
32 37Right-handed alpha
Helix 64
64
S
5 10Right-handed alpha
Helix 65
65
S
11 18Right-handed 310
Helix 66
66
S
23 35Right-handed alpha
Helix 67
67
T
6 11Right-handed alpha
Helix 68
68
T
14 18Right-handed 310
Helix 69
69
T
26 37Right-handed alpha
Helix 70
70
U
5 10Right-handed alpha
Helix 71
71
U
11 18Right-handed 310
Helix 72
72
U
23 35Right-handed alpha
Helix 73
73
V
6 11Right-handed alpha
Helix 74
74
V
14 18Right-handed 310
Helix 75
75
V
26 37Right-handed alpha
Helix 76
76
W
5 10Right-handed alpha
Helix 77
77
W
14 18Right-handed 310
Helix 78
78
W
23 35Right-handed alpha
Helix 79
79
X
6 11Right-handed alpha
Helix 80
80
X
14 18Right-handed 310
Helix 81
81
X
26 37Right-handed alpha
Back to top of page

There are 36 sheets in PDB entry 3J07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
143 146anti-parallel
Strand 3
A
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
97 108anti-parallel
Strand 3
A
112 122anti-parallel
Strand 4
B
112 122anti-parallel
Strand 5
B
97 108anti-parallel
Strand 6
B
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
143 146anti-parallel
Strand 3
B
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 79first strand
Strand 2
C
143 144anti-parallel
Strand 3
C
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 94first strand
Strand 2
C
97 108anti-parallel
Strand 3
C
112 122anti-parallel
Strand 4
D
112 122anti-parallel
Strand 5
D
97 108anti-parallel
Strand 6
D
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 78first strand
Strand 2
D
143 146anti-parallel
Strand 3
D
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 78first strand
Strand 2
E
143 146anti-parallel
Strand 3
E
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 94first strand
Strand 2
E
97 108anti-parallel
Strand 3
E
112 122anti-parallel
Strand 4
F
112 122anti-parallel
Strand 5
F
97 108anti-parallel
Strand 6
F
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
76 78first strand
Strand 2
F
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
78 79first strand
Strand 2
G
143 144anti-parallel
Strand 3
G
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
89 94first strand
Strand 2
G
97 108anti-parallel
Strand 3
G
112 122anti-parallel
Strand 4
H
112 122anti-parallel
Strand 5
H
97 108anti-parallel
Strand 6
H
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
76 78first strand
Strand 2
H
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
78 79first strand
Strand 2
I
143 144anti-parallel
Strand 3
I
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
89 94first strand
Strand 2
I
97 108anti-parallel
Strand 3
I
112 122anti-parallel
Strand 4
J
112 122anti-parallel
Strand 5
J
97 108anti-parallel
Strand 6
J
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
76 78first strand
Strand 2
J
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
89 94first strand
Strand 2
K
97 108anti-parallel
Strand 3
K
112 122anti-parallel
Strand 4
L
112 122anti-parallel
Strand 5
L
97 108anti-parallel
Strand 6
L
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
136 137first strand
Strand 2
K
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
76 78first strand
Strand 2
L
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
76 78first strand
Strand 2
M
143 146anti-parallel
Strand 3
M
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
89 94first strand
Strand 2
M
97 108anti-parallel
Strand 3
M
112 122anti-parallel
Strand 4
N
112 122anti-parallel
Strand 5
N
97 108anti-parallel
Strand 6
N
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
76 78first strand
Strand 2
N
143 146anti-parallel
Strand 3
N
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
89 94first strand
Strand 2
O
97 108anti-parallel
Strand 3
O
112 122anti-parallel
Strand 4
P
112 122anti-parallel
Strand 5
P
97 108anti-parallel
Strand 6
P
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
136 137first strand
Strand 2
O
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
76 78first strand
Strand 2
P
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
89 94first strand
Strand 2
Q
97 108anti-parallel
Strand 3
Q
112 122anti-parallel
Strand 4
R
112 122anti-parallel
Strand 5
R
97 108anti-parallel
Strand 6
R
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
136 137first strand
Strand 2
Q
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
76 78first strand
Strand 2
R
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
89 94first strand
Strand 2
S
97 108anti-parallel
Strand 3
S
112 122anti-parallel
Strand 4
T
112 122anti-parallel
Strand 5
T
97 108anti-parallel
Strand 6
T
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
136 137first strand
Strand 2
S
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
76 78first strand
Strand 2
T
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
78 79first strand
Strand 2
U
143 144anti-parallel
Strand 3
U
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
89 94first strand
Strand 2
U
97 108anti-parallel
Strand 3
U
112 122anti-parallel
Strand 4
V
112 122anti-parallel
Strand 5
V
97 108anti-parallel
Strand 6
V
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
76 78first strand
Strand 2
V
143 146anti-parallel
Strand 3
V
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
89 94first strand
Strand 2
W
97 108anti-parallel
Strand 3
W
112 122anti-parallel
Strand 4
X
112 122anti-parallel
Strand 5
X
97 108anti-parallel
Strand 6
X
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
136 137first strand
Strand 2
W
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
76 78first strand
Strand 2
X
144 146anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il