Analysis of interatomic Contacts of Structural Units in PDB entry:
3J08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J08 entry

There are 2 chains in PDB entry 3J08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 93ASP 737
B
 GLU 93ASP 737
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3J08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
108 116Right-handed alpha
Helix 2
2
A
131 147Right-handed alpha
Helix 3
3
A
155 159Right-handed 310
Helix 4
4
A
164 181Right-handed alpha
Helix 5
5
A
190 210Right-handed alpha
Helix 6
6
A
216 222Right-handed alpha
Helix 7
7
A
241 243Right-handed 310
Helix 8
8
A
272 277Right-handed alpha
Helix 9
9
A
308 311Right-handed 310
Helix 10
10
A
312 322Right-handed alpha
Helix 11
11
A
330 356Right-handed alpha
Helix 12
12
A
372 380Right-handed alpha
Helix 13
13
A
383 401Right-handed alpha
Helix 14
14
A
410 415Right-handed alpha
Helix 15
15
A
416 418Right-handed 310
Helix 16
16
A
426 428Right-handed 310
Helix 17
17
A
445 458Right-handed alpha
Helix 18
18
A
462 475Right-handed alpha
Helix 19
19
A
502 509Right-handed alpha
Helix 20
20
A
514 526Right-handed alpha
Helix 21
21
A
553 564Right-handed alpha
Helix 22
22
A
575 587Right-handed alpha
Helix 23
23
A
599 608Right-handed alpha
Helix 24
24
A
622 629Right-handed alpha
Helix 25
25
A
656 691Right-handed alpha
Helix 26
26
A
703 713Right-handed alpha
Helix 27
27
A
713 722Right-handed alpha
Helix 28
28
B
108 116Right-handed alpha
Helix 29
29
B
131 147Right-handed alpha
Helix 30
30
B
155 159Right-handed 310
Helix 31
31
B
164 181Right-handed alpha
Helix 32
32
B
190 210Right-handed alpha
Helix 33
33
B
216 222Right-handed alpha
Helix 34
34
B
241 243Right-handed 310
Helix 35
35
B
272 277Right-handed alpha
Helix 36
36
B
308 311Right-handed 310
Helix 37
37
B
312 322Right-handed alpha
Helix 38
38
B
330 356Right-handed alpha
Helix 39
39
B
372 380Right-handed alpha
Helix 40
40
B
383 401Right-handed alpha
Helix 41
41
B
410 415Right-handed alpha
Helix 42
42
B
416 418Right-handed 310
Helix 43
43
B
426 428Right-handed 310
Helix 44
44
B
445 458Right-handed alpha
Helix 45
45
B
462 475Right-handed alpha
Helix 46
46
B
502 509Right-handed alpha
Helix 47
47
B
514 526Right-handed alpha
Helix 48
48
B
553 564Right-handed alpha
Helix 49
49
B
575 587Right-handed alpha
Helix 50
50
B
599 608Right-handed alpha
Helix 51
51
B
622 629Right-handed alpha
Helix 52
52
B
656 691Right-handed alpha
Helix 53
53
B
703 713Right-handed alpha
Helix 54
54
B
713 722Right-handed alpha
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There are 8 sheets in PDB entry 3J08. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 239first strand
Strand 2
A
226 231anti-parallel
Strand 3
A
248 251anti-parallel
Strand 4
A
301 307anti-parallel
Strand 5
A
260 265anti-parallel
Strand 6
A
289 290anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
268 271anti-parallel
Strand 3
A
295 296anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 592first strand
Strand 2
A
567 571parallel
Strand 3
A
420 424parallel
Strand 4
A
613 617parallel
Strand 5
A
631 635parallel
Strand 6
A
649 650parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 441first strand
Strand 2
A
539 547anti-parallel
Strand 3
A
532 536anti-parallel
Strand 4
A
498 501anti-parallel
Strand 5
A
492 495anti-parallel
Strand 6
A
486 488anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 239first strand
Strand 2
B
226 231anti-parallel
Strand 3
B
248 251anti-parallel
Strand 4
B
301 307anti-parallel
Strand 5
B
260 265anti-parallel
Strand 6
B
289 290anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 284first strand
Strand 2
B
268 271anti-parallel
Strand 3
B
295 296anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 592first strand
Strand 2
B
567 571parallel
Strand 3
B
420 424parallel
Strand 4
B
613 617parallel
Strand 5
B
631 635parallel
Strand 6
B
649 650parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
435 441first strand
Strand 2
B
539 547anti-parallel
Strand 3
B
532 536anti-parallel
Strand 4
B
498 501anti-parallel
Strand 5
B
492 495anti-parallel
Strand 6
B
486 488anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il