Analysis of interatomic Contacts of Structural Units in PDB entry:
3J09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J09 entry

There are 2 chains in PDB entry 3J09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	ASP 737
B	PRO 15	ASP 737

There are 46 helices in PDB entry 3J09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	127	A	27	40	Right-handed alpha
Helix 2	128	A	66	78	Right-handed alpha
Helix 3	129	A	106	116	Right-handed alpha
Helix 4	130	A	131	147	Right-handed alpha
Helix 5	131	A	164	179	Right-handed alpha
Helix 6	132	A	188	210	Right-handed alpha
Helix 7	133	A	216	222	Right-handed alpha
Helix 8	134	A	241	243	Right-handed alpha
Helix 9	135	A	272	277	Right-handed alpha
Helix 10	136	A	308	322	Right-handed alpha
Helix 11	137	A	329	357	Right-handed alpha
Helix 12	138	A	368	380	Right-handed alpha
Helix 13	139	A	383	401	Right-handed alpha
Helix 14	140	A	410	417	Right-handed alpha
Helix 15	141	A	445	458	Right-handed alpha
Helix 16	143	A	502	509	Right-handed alpha
Helix 17	144	A	514	526	Right-handed alpha
Helix 18	145	A	553	564	Right-handed alpha
Helix 19	146	A	575	587	Right-handed alpha
Helix 20	147	A	599	608	Right-handed alpha
Helix 21	148	A	622	629	Right-handed alpha
Helix 22	149	A	655	693	Right-handed alpha
Helix 23	150	A	703	722	Right-handed alpha
Helix 24	151	B	27	40	Right-handed alpha
Helix 25	152	B	66	78	Right-handed alpha
Helix 26	153	B	106	116	Right-handed alpha
Helix 27	154	B	131	147	Right-handed alpha
Helix 28	155	B	164	179	Right-handed alpha
Helix 29	156	B	188	210	Right-handed alpha
Helix 30	157	B	216	222	Right-handed alpha
Helix 31	158	B	241	243	Right-handed alpha
Helix 32	159	B	272	277	Right-handed alpha
Helix 33	160	B	308	322	Right-handed alpha
Helix 34	161	B	329	357	Right-handed alpha
Helix 35	162	B	368	380	Right-handed alpha
Helix 36	163	B	383	401	Right-handed alpha
Helix 37	164	B	410	417	Right-handed alpha
Helix 38	165	B	445	458	Right-handed alpha
Helix 39	167	B	502	509	Right-handed alpha
Helix 40	168	B	514	526	Right-handed alpha
Helix 41	169	B	553	564	Right-handed alpha
Helix 42	170	B	575	587	Right-handed alpha
Helix 43	171	B	599	608	Right-handed alpha
Helix 44	172	B	622	629	Right-handed alpha
Helix 45	173	B	655	693	Right-handed alpha
Helix 46	174	B	703	722	Right-handed alpha

There are 50 sheets in PDB entry 3J09. Click on sheet of interest to get list of strands forming it: 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161,

There are 1 strands in 112 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand

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There are 1 strands in 113 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand

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There are 1 strands in 114 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand

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There are 1 strands in 115 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand

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There are 1 strands in 116 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand

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There are 1 strands in 117 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	239	first strand

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There are 1 strands in 118 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand

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There are 1 strands in 119 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	265	first strand

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There are 1 strands in 120 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand

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There are 1 strands in 121 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand

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There are 1 strands in 122 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand

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There are 1 strands in 123 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand

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There are 1 strands in 124 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	307	first strand

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There are 1 strands in 125 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	424	first strand

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There are 1 strands in 126 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	441	first strand

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There are 1 strands in 127 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	488	first strand

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There are 1 strands in 128 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	495	first strand

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There are 1 strands in 129 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	501	first strand

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There are 1 strands in 130 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	536	first strand

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There are 1 strands in 131 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	547	first strand

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There are 1 strands in 132 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	571	first strand

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There are 1 strands in 133 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand

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There are 1 strands in 134 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	617	first strand

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There are 1 strands in 135 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	635	first strand

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There are 1 strands in 136 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	650	first strand

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There are 1 strands in 137 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand

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There are 1 strands in 138 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	50	first strand

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There are 1 strands in 139 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand

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There are 1 strands in 140 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand

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There are 1 strands in 141 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand

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There are 1 strands in 142 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand

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There are 1 strands in 143 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand

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There are 1 strands in 144 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	265	first strand

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There are 1 strands in 145 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand

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There are 1 strands in 146 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand

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There are 1 strands in 147 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand

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There are 1 strands in 148 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand

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There are 1 strands in 149 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	307	first strand

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There are 1 strands in 150 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	424	first strand

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There are 1 strands in 151 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	441	first strand

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There are 1 strands in 152 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	488	first strand

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There are 1 strands in 153 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	495	first strand

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There are 1 strands in 154 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	501	first strand

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There are 1 strands in 155 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	536	first strand

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There are 1 strands in 156 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	547	first strand

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There are 1 strands in 157 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	571	first strand

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There are 1 strands in 158 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	592	first strand

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There are 1 strands in 159 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	617	first strand

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There are 1 strands in 160 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	635	first strand

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There are 1 strands in 161 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	650	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J09

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J09