Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J0E entry

There are 9 chains in PDB entry 3J0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 1905	U 1926
B	G 1945	C 1961
C	G 2246	C 2258
D	G 2588	C 2606
E	C 1404	G 1421
e	C 1479	G 1497
F	ALA 1	ALA 123
G	MET 1	GLY 185
H	ALA 2	GLY 703

There are 28 helices in PDB entry 3J0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	F	2	9	Right-handed alpha
Helix 2	2	G	2	27	Right-handed alpha
Helix 3	3	G	35	39	Right-handed 310
Helix 4	4	G	51	55	Right-handed 310
Helix 5	5	G	72	84	Right-handed alpha
Helix 6	6	G	111	148	Right-handed alpha
Helix 7	7	G	150	184	Right-handed alpha
Helix 8	8	H	19	21	Right-handed 310
Helix 9	9	H	22	34	Right-handed alpha
Helix 10	10	H	45	49	Right-handed 310
Helix 11	11	H	50	56	Right-handed alpha
Helix 12	12	H	96	104	Right-handed alpha
Helix 13	13	H	120	133	Right-handed alpha
Helix 14	14	H	150	161	Right-handed alpha
Helix 15	15	H	175	179	Right-handed 310
Helix 16	16	H	208	228	Right-handed alpha
Helix 17	17	H	230	240	Right-handed alpha
Helix 18	18	H	244	258	Right-handed alpha
Helix 19	19	H	274	286	Right-handed alpha
Helix 20	20	H	424	442	Right-handed alpha
Helix 21	21	H	462	476	Right-handed alpha
Helix 22	22	H	546	548	Right-handed 310
Helix 23	23	H	549	564	Right-handed alpha
Helix 24	24	H	589	605	Right-handed alpha
Helix 25	25	H	627	638	Right-handed alpha
Helix 26	26	H	661	663	Right-handed 310
Helix 27	27	H	665	675	Right-handed alpha
Helix 28	28	H	691	703	Right-handed alpha

There are 13 sheets in PDB entry 3J0E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	80	81	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	55	first strand
Strand 2	F	61	65	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	45	first strand
Strand 2	G	48	50	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	62	first strand
Strand 2	G	65	69	anti-parallel
Strand 3	G	98	102	anti-parallel
Strand 4	G	91	94	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	64	first strand
Strand 2	H	84	86	anti-parallel
Strand 3	H	12	17	parallel
Strand 4	H	108	114	parallel
Strand 5	H	137	142	parallel
Strand 6	H	262	266	parallel
Strand 7	H	166	168	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	170	173	first strand
Strand 2	H	181	184	anti-parallel
Strand 3	H	189	192	anti-parallel
Strand 4	H	203	204	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	296	298	first strand
Strand 2	H	306	308	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	371	374	first strand
Strand 2	H	363	366	anti-parallel
Strand 3	H	382	386	anti-parallel
Strand 4	H	331	340	anti-parallel
Strand 5	H	318	327	anti-parallel
Strand 6	H	396	398	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	343	344	first strand
Strand 2	H	376	377	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	351	first strand
Strand 2	H	356	360	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	417	419	first strand
Strand 2	H	457	459	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	502	507	first strand
Strand 2	H	514	524	anti-parallel
Strand 3	H	574	582	anti-parallel
Strand 4	H	535	538	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	641	648	first strand
Strand 2	H	651	659	anti-parallel
Strand 3	H	614	624	anti-parallel
Strand 4	H	679	688	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0E