Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J0I entry

There are 6 chains in PDB entry 3J0I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 102	GLY 381
B	ALA 102	GLY 381
C	ALA 102	GLY 381
D	ALA 102	GLY 381
E	ALA 102	GLY 381
F	ALA 102	GLU 164

There are 42 helices in PDB entry 3J0I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	198	202	Right-handed 310
Helix 2	2	A	220	228	Right-handed alpha
Helix 3	3	A	276	285	Right-handed alpha
Helix 4	4	A	307	326	Right-handed alpha
Helix 5	5	A	327	332	Right-handed 310
Helix 6	6	A	335	339	Right-handed 310
Helix 7	7	A	359	363	Right-handed 310
Helix 8	8	B	198	202	Right-handed 310
Helix 9	9	B	220	228	Right-handed alpha
Helix 10	10	B	276	285	Right-handed alpha
Helix 11	11	B	307	326	Right-handed alpha
Helix 12	12	B	327	332	Right-handed 310
Helix 13	13	B	335	339	Right-handed 310
Helix 14	14	B	359	363	Right-handed 310
Helix 15	15	C	198	202	Right-handed 310
Helix 16	16	C	220	228	Right-handed alpha
Helix 17	17	C	276	285	Right-handed alpha
Helix 18	18	C	307	326	Right-handed alpha
Helix 19	19	C	327	332	Right-handed 310
Helix 20	20	C	335	339	Right-handed 310
Helix 21	21	C	359	363	Right-handed 310
Helix 22	22	D	198	202	Right-handed 310
Helix 23	23	D	220	228	Right-handed alpha
Helix 24	24	D	276	285	Right-handed alpha
Helix 25	25	D	307	326	Right-handed alpha
Helix 26	26	D	327	332	Right-handed 310
Helix 27	27	D	335	339	Right-handed 310
Helix 28	28	D	359	363	Right-handed 310
Helix 29	29	E	198	202	Right-handed 310
Helix 30	30	E	220	228	Right-handed alpha
Helix 31	31	E	276	285	Right-handed alpha
Helix 32	32	E	307	326	Right-handed alpha
Helix 33	33	E	327	332	Right-handed 310
Helix 34	34	E	335	339	Right-handed 310
Helix 35	35	E	359	363	Right-handed 310
Helix 36	36	F	198	202	Right-handed 310
Helix 37	37	F	220	228	Right-handed alpha
Helix 38	38	F	276	285	Right-handed alpha
Helix 39	39	F	307	326	Right-handed alpha
Helix 40	40	F	327	332	Right-handed 310
Helix 41	41	F	335	339	Right-handed 310
Helix 42	42	F	359	363	Right-handed 310

There are 30 sheets in PDB entry 3J0I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	176	first strand
Strand 2	A	183	193	anti-parallel
Strand 3	A	305	306	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	176	first strand
Strand 2	A	183	193	anti-parallel
Strand 3	A	106	118	anti-parallel
Strand 4	A	148	157	anti-parallel
Strand 5	A	355	357	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	248	first strand
Strand 2	A	232	238	anti-parallel
Strand 3	A	258	260	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	248	first strand
Strand 2	A	232	238	anti-parallel
Strand 3	A	204	210	anti-parallel
Strand 4	A	373	374	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	273	274	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	183	193	anti-parallel
Strand 3	B	305	306	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	183	193	anti-parallel
Strand 3	B	106	118	anti-parallel
Strand 4	B	148	157	anti-parallel
Strand 5	B	355	357	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	248	first strand
Strand 2	B	232	238	anti-parallel
Strand 3	B	258	260	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	248	first strand
Strand 2	B	232	238	anti-parallel
Strand 3	B	204	210	anti-parallel
Strand 4	B	373	374	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	273	274	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	176	first strand
Strand 2	C	183	193	anti-parallel
Strand 3	C	305	306	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	176	first strand
Strand 2	C	183	193	anti-parallel
Strand 3	C	106	118	anti-parallel
Strand 4	C	148	157	anti-parallel
Strand 5	C	355	357	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	232	238	anti-parallel
Strand 3	C	258	260	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	232	238	anti-parallel
Strand 3	C	204	210	anti-parallel
Strand 4	C	373	374	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	273	274	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	176	first strand
Strand 2	D	183	193	anti-parallel
Strand 3	D	305	306	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	176	first strand
Strand 2	D	183	193	anti-parallel
Strand 3	D	106	118	anti-parallel
Strand 4	D	148	157	anti-parallel
Strand 5	D	355	357	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	248	first strand
Strand 2	D	232	238	anti-parallel
Strand 3	D	258	260	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	248	first strand
Strand 2	D	232	238	anti-parallel
Strand 3	D	204	210	anti-parallel
Strand 4	D	373	374	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	268	first strand
Strand 2	D	273	274	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	176	first strand
Strand 2	E	183	193	anti-parallel
Strand 3	E	305	306	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	176	first strand
Strand 2	E	183	193	anti-parallel
Strand 3	E	106	118	anti-parallel
Strand 4	E	148	157	anti-parallel
Strand 5	E	355	357	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	248	first strand
Strand 2	E	232	238	anti-parallel
Strand 3	E	258	260	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	248	first strand
Strand 2	E	232	238	anti-parallel
Strand 3	E	204	210	anti-parallel
Strand 4	E	373	374	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	268	first strand
Strand 2	E	273	274	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	176	first strand
Strand 2	F	183	193	anti-parallel
Strand 3	F	305	306	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	176	first strand
Strand 2	F	183	193	anti-parallel
Strand 3	F	106	118	anti-parallel
Strand 4	F	148	157	anti-parallel
Strand 5	F	355	357	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	248	first strand
Strand 2	F	232	238	anti-parallel
Strand 3	F	258	260	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	248	first strand
Strand 2	F	232	238	anti-parallel
Strand 3	F	204	210	anti-parallel
Strand 4	F	373	374	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	267	268	first strand
Strand 2	F	273	274	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J0I

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0I