Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J0J entry

There are 13 chains in PDB entry 3J0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 577
B	MET 1	LEU 577
C	MET 1	LEU 577
D	GLU 7	TYR 463
E	GLU 7	TYR 463
F	GLU 7	TYR 463
G	MET 1	GLU 205
H	MET 1	LEU 104
I	GLY 21	PRO 120
J	LYS 3	GLY 188
K	GLY 21	PRO 120
L	LYS 3	GLY 188
M	ASP 3	CYS 322

There are175 helices in PDB entry 3J0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	54	58	Right-handed 310
Helix 2	2	A	209	216	Right-handed alpha
Helix 3	3	A	233	245	Right-handed alpha
Helix 4	4	A	262	267	Right-handed alpha
Helix 5	5	A	268	272	Right-handed 310
Helix 6	6	A	280	283	Right-handed 310
Helix 7	7	A	295	316	Right-handed alpha
Helix 8	8	A	326	341	Right-handed alpha
Helix 9	9	A	346	350	Right-handed 310
Helix 10	10	A	351	352	Right-handed 310
Helix 11	11	A	353	364	Right-handed alpha
Helix 12	12	A	394	403	Right-handed alpha
Helix 13	13	A	410	416	Right-handed alpha
Helix 14	14	A	431	443	Right-handed alpha
Helix 15	15	A	446	472	Right-handed alpha
Helix 16	16	A	477	494	Right-handed alpha
Helix 17	17	A	508	532	Right-handed alpha
Helix 18	18	A	535	541	Right-handed alpha
Helix 19	19	A	543	549	Right-handed alpha
Helix 20	20	A	550	554	Right-handed 310
Helix 21	21	A	557	576	Right-handed alpha
Helix 22	22	B	54	58	Right-handed 310
Helix 23	23	B	209	216	Right-handed alpha
Helix 24	24	B	233	245	Right-handed alpha
Helix 25	25	B	262	267	Right-handed alpha
Helix 26	26	B	268	272	Right-handed 310
Helix 27	27	B	280	283	Right-handed 310
Helix 28	28	B	295	316	Right-handed alpha
Helix 29	29	B	326	341	Right-handed alpha
Helix 30	30	B	346	350	Right-handed 310
Helix 31	31	B	351	352	Right-handed 310
Helix 32	32	B	353	364	Right-handed alpha
Helix 33	33	B	394	403	Right-handed alpha
Helix 34	34	B	410	416	Right-handed alpha
Helix 35	35	B	431	443	Right-handed alpha
Helix 36	36	B	446	472	Right-handed alpha
Helix 37	37	B	477	494	Right-handed alpha
Helix 38	38	B	508	532	Right-handed alpha
Helix 39	39	B	535	541	Right-handed alpha
Helix 40	40	B	543	549	Right-handed alpha
Helix 41	41	B	550	554	Right-handed 310
Helix 42	42	B	557	576	Right-handed alpha
Helix 43	43	C	54	58	Right-handed 310
Helix 44	44	C	209	216	Right-handed alpha
Helix 45	45	C	233	245	Right-handed alpha
Helix 46	46	C	262	267	Right-handed alpha
Helix 47	47	C	268	272	Right-handed 310
Helix 48	48	C	280	283	Right-handed 310
Helix 49	49	C	295	316	Right-handed alpha
Helix 50	50	C	326	341	Right-handed alpha
Helix 51	51	C	346	350	Right-handed 310
Helix 52	52	C	351	352	Right-handed 310
Helix 53	53	C	353	364	Right-handed alpha
Helix 54	54	C	394	403	Right-handed alpha
Helix 55	55	C	410	416	Right-handed alpha
Helix 56	56	C	431	443	Right-handed alpha
Helix 57	57	C	446	472	Right-handed alpha
Helix 58	58	C	477	494	Right-handed alpha
Helix 59	59	C	508	532	Right-handed alpha
Helix 60	60	C	535	541	Right-handed alpha
Helix 61	61	C	543	549	Right-handed alpha
Helix 62	62	C	550	554	Right-handed 310
Helix 63	63	C	557	576	Right-handed alpha
Helix 64	64	D	85	89	Right-handed 310
Helix 65	65	D	135	140	Right-handed alpha
Helix 66	66	D	159	171	Right-handed alpha
Helix 67	67	D	197	212	Right-handed alpha
Helix 68	68	D	213	215	Right-handed 310
Helix 69	69	D	227	249	Right-handed alpha
Helix 70	70	D	259	274	Right-handed alpha
Helix 71	71	D	279	283	Right-handed 310
Helix 72	72	D	286	296	Right-handed alpha
Helix 73	73	D	317	320	Right-handed 310
Helix 74	74	D	323	330	Right-handed alpha
Helix 75	75	D	331	333	Right-handed 310
Helix 76	76	D	340	346	Right-handed alpha
Helix 77	77	D	361	366	Right-handed 310
Helix 78	78	D	374	400	Right-handed alpha
Helix 79	79	D	401	404	Right-handed 310
Helix 80	80	D	405	422	Right-handed alpha
Helix 81	81	D	431	444	Right-handed alpha
Helix 82	82	D	445	446	Right-handed 310
Helix 83	83	D	447	451	Right-handed 310
Helix 84	84	D	455	463	Right-handed alpha
Helix 85	85	E	85	89	Right-handed 310
Helix 86	86	E	135	140	Right-handed alpha
Helix 87	87	E	159	171	Right-handed alpha
Helix 88	88	E	197	212	Right-handed alpha
Helix 89	89	E	213	215	Right-handed 310
Helix 90	90	E	227	249	Right-handed alpha
Helix 91	91	E	259	274	Right-handed alpha
Helix 92	92	E	279	283	Right-handed 310
Helix 93	93	E	286	296	Right-handed alpha
Helix 94	94	E	317	320	Right-handed 310
Helix 95	95	E	323	330	Right-handed alpha
Helix 96	96	E	331	333	Right-handed 310
Helix 97	97	E	340	346	Right-handed alpha
Helix 98	98	E	361	366	Right-handed 310
Helix 99	99	E	374	400	Right-handed alpha
Helix 100	100	E	401	404	Right-handed 310
Helix 101	101	E	405	422	Right-handed alpha
Helix 102	102	E	431	444	Right-handed alpha
Helix 103	103	E	445	446	Right-handed 310
Helix 104	104	E	447	451	Right-handed 310
Helix 105	105	E	455	463	Right-handed alpha
Helix 106	106	F	85	89	Right-handed 310
Helix 107	107	F	135	140	Right-handed alpha
Helix 108	108	F	159	171	Right-handed alpha
Helix 109	109	F	197	212	Right-handed alpha
Helix 110	110	F	213	215	Right-handed 310
Helix 111	111	F	227	249	Right-handed alpha
Helix 112	112	F	259	274	Right-handed alpha
Helix 113	113	F	279	283	Right-handed 310
Helix 114	114	F	286	296	Right-handed alpha
Helix 115	115	F	317	320	Right-handed 310
Helix 116	116	F	323	330	Right-handed alpha
Helix 117	117	F	331	333	Right-handed 310
Helix 118	118	F	340	346	Right-handed alpha
Helix 119	119	F	361	366	Right-handed 310
Helix 120	120	F	374	400	Right-handed alpha
Helix 121	121	F	401	404	Right-handed 310
Helix 122	122	F	405	422	Right-handed alpha
Helix 123	123	F	431	444	Right-handed alpha
Helix 124	124	F	445	446	Right-handed 310
Helix 125	125	F	447	451	Right-handed 310
Helix 126	126	F	455	463	Right-handed alpha
Helix 127	127	G	4	55	Right-handed alpha
Helix 128	128	G	133	139	Right-handed alpha
Helix 129	129	G	139	151	Right-handed alpha
Helix 130	130	G	151	158	Right-handed alpha
Helix 131	131	G	158	173	Right-handed alpha
Helix 132	132	G	173	205	Right-handed alpha
Helix 133	133	H	6	16	Right-handed alpha
Helix 134	134	H	25	40	Right-handed alpha
Helix 135	135	H	54	63	Right-handed alpha
Helix 136	136	H	85	99	Right-handed alpha
Helix 137	137	I	23	79	Right-handed alpha
Helix 138	138	I	82	106	Right-handed alpha
Helix 139	139	I	107	119	Right-handed alpha
Helix 140	140	J	5	23	Right-handed alpha
Helix 141	141	J	28	93	Right-handed alpha
Helix 142	142	J	99	114	Right-handed alpha
Helix 143	143	J	167	173	Right-handed alpha
Helix 144	144	J	178	187	Right-handed alpha
Helix 145	145	K	23	79	Right-handed alpha
Helix 146	146	K	82	106	Right-handed alpha
Helix 147	147	K	107	119	Right-handed alpha
Helix 148	148	L	5	23	Right-handed alpha
Helix 149	149	L	28	93	Right-handed alpha
Helix 150	150	L	99	114	Right-handed alpha
Helix 151	151	L	167	173	Right-handed alpha
Helix 152	152	L	178	187	Right-handed alpha
Helix 153	153	M	5	17	Right-handed alpha
Helix 154	154	M	21	30	Right-handed alpha
Helix 155	155	M	32	42	Right-handed alpha
Helix 156	156	M	43	49	Right-handed 310
Helix 157	157	M	53	69	Right-handed alpha
Helix 158	158	M	71	75	Right-handed 310
Helix 159	159	M	77	104	Right-handed alpha
Helix 160	160	M	108	112	Right-handed 310
Helix 161	161	M	120	128	Right-handed alpha
Helix 162	162	M	132	142	Right-handed alpha
Helix 163	163	M	145	158	Right-handed alpha
Helix 164	164	M	160	169	Right-handed alpha
Helix 165	165	M	169	180	Right-handed alpha
Helix 166	166	M	181	183	Right-handed 310
Helix 167	167	M	185	207	Right-handed alpha
Helix 168	168	M	213	217	Right-handed 310
Helix 169	169	M	226	235	Right-handed alpha
Helix 170	170	M	237	243	Right-handed 310
Helix 171	171	M	249	253	Right-handed 310
Helix 172	172	M	257	275	Right-handed alpha
Helix 173	173	M	276	279	Right-handed 310
Helix 174	174	M	283	310	Right-handed alpha
Helix 175	175	M	317	321	Right-handed 310

There are 33 sheets in PDB entry 3J0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	11	first strand
Strand 2	A	14	19	anti-parallel
Strand 3	A	47	51	anti-parallel
Strand 4	A	36	42	anti-parallel
Strand 5	A	28	31	anti-parallel
Strand 6	A	63	66	anti-parallel
Strand 7	A	4	11	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	185	187	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	117	121	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	173	175	anti-parallel
Strand 4	A	180	181	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	366	370	anti-parallel
Strand 3	A	375	384	anti-parallel
Strand 4	A	319	324	parallel
Strand 5	A	249	253	parallel
Strand 6	A	285	287	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	366	370	anti-parallel
Strand 3	A	375	384	anti-parallel
Strand 4	A	223	227	parallel
Strand 5	A	405	406	parallel
Strand 6	A	428	429	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	11	first strand
Strand 2	B	14	19	anti-parallel
Strand 3	B	47	51	anti-parallel
Strand 4	B	36	42	anti-parallel
Strand 5	B	28	31	anti-parallel
Strand 6	B	63	66	anti-parallel
Strand 7	B	4	11	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	185	188	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	285	289	parallel
Strand 3	B	249	253	parallel
Strand 4	B	319	324	parallel
Strand 5	B	375	384	parallel
Strand 6	B	366	369	anti-parallel
Strand 7	B	197	198	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	285	289	parallel
Strand 3	B	249	253	parallel
Strand 4	B	319	324	parallel
Strand 5	B	375	384	parallel
Strand 6	B	223	227	parallel
Strand 7	B	405	406	parallel
Strand 8	B	428	429	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	148	first strand
Strand 2	B	134	138	anti-parallel
Strand 3	B	117	121	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	173	175	anti-parallel
Strand 4	B	180	181	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	11	first strand
Strand 2	C	14	19	anti-parallel
Strand 3	C	47	51	anti-parallel
Strand 4	C	36	42	anti-parallel
Strand 5	C	27	31	anti-parallel
Strand 6	C	63	70	anti-parallel
Strand 7	C	4	11	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	185	188	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	285	289	parallel
Strand 3	C	249	253	parallel
Strand 4	C	319	324	parallel
Strand 5	C	375	384	parallel
Strand 6	C	366	369	anti-parallel

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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	285	289	parallel
Strand 3	C	249	253	parallel
Strand 4	C	319	324	parallel
Strand 5	C	375	384	parallel
Strand 6	C	223	227	parallel
Strand 7	C	405	406	parallel
Strand 8	C	428	429	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	148	first strand
Strand 2	C	134	138	anti-parallel
Strand 3	C	117	121	anti-parallel
Strand 4	C	164	166	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	155	160	anti-parallel
Strand 3	C	173	175	anti-parallel
Strand 4	C	180	181	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	15	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	55	60	anti-parallel
Strand 4	D	44	52	anti-parallel
Strand 5	D	33	36	anti-parallel
Strand 6	D	72	75	anti-parallel
Strand 7	D	8	15	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	110	112	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	217	223	parallel
Strand 3	D	187	196	parallel
Strand 4	D	252	258	parallel
Strand 5	D	307	316	parallel
Strand 6	D	299	300	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	217	223	parallel
Strand 3	D	187	196	parallel
Strand 4	D	252	258	parallel
Strand 5	D	307	316	parallel
Strand 6	D	152	155	parallel
Strand 7	D	337	338	parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	15	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	55	60	anti-parallel
Strand 4	E	44	52	anti-parallel
Strand 5	E	33	36	anti-parallel
Strand 6	E	72	75	anti-parallel
Strand 7	E	8	15	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	84	first strand
Strand 2	E	110	112	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	217	223	parallel
Strand 3	E	187	196	parallel
Strand 4	E	252	258	parallel
Strand 5	E	307	316	parallel
Strand 6	E	299	300	anti-parallel

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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	217	223	parallel
Strand 3	E	187	196	parallel
Strand 4	E	252	258	parallel
Strand 5	E	307	316	parallel
Strand 6	E	152	155	parallel
Strand 7	E	335	338	parallel
Strand 8	E	358	359	anti-parallel

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There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	15	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	55	60	anti-parallel
Strand 4	F	44	52	anti-parallel
Strand 5	F	33	36	anti-parallel
Strand 6	F	72	75	anti-parallel
Strand 7	F	8	15	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	110	113	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	217	223	parallel
Strand 3	F	187	196	parallel
Strand 4	F	252	258	parallel
Strand 5	F	307	316	parallel
Strand 6	F	299	300	anti-parallel

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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	217	223	parallel
Strand 3	F	187	196	parallel
Strand 4	F	252	258	parallel
Strand 5	F	307	316	parallel
Strand 6	F	152	155	parallel
Strand 7	F	335	338	parallel
Strand 8	F	358	359	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	2	5	parallel
Strand 3	H	44	48	parallel
Strand 4	H	70	74	parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	122	first strand
Strand 2	J	151	155	anti-parallel
Strand 3	J	163	166	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	122	first strand
Strand 2	L	151	155	anti-parallel
Strand 3	L	163	166	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0J