Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J0L entry

There are 32 chains in PDB entry 3J0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 G 541 A 588
b
 G 877 C 888
c
 G 972 C 988
d
 C 1543 A 1549
e
 A 1132 A 1135
E
 U 1589 U 1593
f
 G 1236 C 1256
g
 G 1142 G 1172
G
 G 1429 C 1441
h
 C 1606 A 1716
T
 THR 9ARG 200
K
 GLU 12LEU 151
L
 GLY 2ARG 142
X
 THR 7ALA 74
S
 PHE 11LYS 135
1
 G 1001 U 1050
2
 G 2194 G 2305
3
 G 2477 A 2488
4
 G 2614 C 2627
5
 C 2653 G 2658
6
 A 2689 C 2707
7
 G 2824 U 2873
8
 G 2957 A 2976
B
 ILE 4LEU 216
J
 ARG 3ALA 221
F
 VAL 2GLU 96
Y
 G 1 C 75
y
 U 19 C 21
V
 G 1 C 75
v
 U 16 C 18
W
 G 1 A 76
w
 A 14 A 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3J0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
T
12 16Right-handed 310
Helix 2
2
T
18 22Right-handed 310
Helix 3
3
T
56 61Right-handed 310
Helix 4
4
T
62 72Right-handed alpha
Helix 5
5
T
80 100Right-handed alpha
Helix 6
6
T
103 114Right-handed alpha
Helix 7
7
T
137 158Right-handed alpha
Helix 8
8
T
163 178Right-handed alpha
Helix 9
9
T
183 200Right-handed alpha
Helix 10
10
K
57 62Right-handed alpha
Helix 11
11
K
64 69Right-handed 310
Helix 12
12
K
70 89Right-handed alpha
Helix 13
13
K
110 122Right-handed alpha
Helix 14
14
L
11 23Right-handed alpha
Helix 15
15
L
26 34Right-handed alpha
Helix 16
16
L
35 40Right-handed 310
Helix 17
17
L
90 94Right-handed 310
Helix 18
18
L
130 136Right-handed alpha
Helix 19
19
X
12 18Right-handed alpha
Helix 20
20
X
33 45Right-handed alpha
Helix 21
21
X
66 74Right-handed alpha
Helix 22
22
S
17 26Right-handed alpha
Helix 23
23
S
35 42Right-handed alpha
Helix 24
24
S
43 54Right-handed alpha
Helix 25
25
S
56 72Right-handed alpha
Helix 26
26
S
91 95Right-handed 310
Helix 27
27
S
113 117Right-handed 310
Helix 28
28
S
120 125Right-handed 310
Helix 29
29
B
8 13Right-handed alpha
Helix 30
30
B
74 78Right-handed 310
Helix 31
31
B
98 105Right-handed alpha
Helix 32
32
B
128 133Right-handed alpha
Helix 33
33
B
146 151Right-handed 310
Helix 34
34
B
176 186Right-handed alpha
Helix 35
35
J
61 79Right-handed alpha
Helix 36
36
J
141 143Right-handed 310
Helix 37
37
J
144 158Right-handed alpha
Helix 38
38
J
178 183Right-handed alpha
Helix 39
39
J
206 219Right-handed alpha
Helix 40
40
F
37 44Right-handed alpha
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There are 8 sheets in PDB entry 3J0L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
118 125first strand
Strand 2
T
128 135anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
52 55first strand
Strand 2
K
43 45anti-parallel
Strand 3
K
28 34anti-parallel
Strand 4
K
92 98parallel
Strand 5
K
125 131parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
48 59first strand
Strand 2
L
67 75anti-parallel
Strand 3
L
81 85anti-parallel
Strand 4
L
121 126parallel
Strand 5
L
100 105anti-parallel
Strand 6
L
48 59anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
81 83first strand
Strand 2
S
98 102parallel
Strand 3
S
107 111anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
134 135first strand
Strand 2
J
50 53anti-parallel
Strand 3
J
166 167anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
58 60first strand
Strand 2
J
127 129anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
96 99first strand
Strand 2
J
121 125anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
26 27first strand
Strand 2
F
70 71anti-parallel
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